KEGG   Clupea harengus (Atlantic herring): 105903991
Entry
105903991         CDS       T09045                                 
Symbol
fbxw7
Name
(RefSeq) F-box/WD repeat-containing protein 7 isoform X4
  KO
K10260  F-box and WD-40 domain protein 7
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105903991 (fbxw7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:char04131]
    105903991 (fbxw7)
   04121 Ubiquitin system [BR:char04121]
    105903991 (fbxw7)
Membrane trafficking [BR:char04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    105903991 (fbxw7)
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     105903991 (fbxw7)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_THOC3 WD40_WDHD1_1st WD40_Gbeta Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd EIF3I Beta-prop_TEP1_C Beta-prop_SCAP WDR55 Beta-prop_WDR41 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_EML_2 F-box-like ANAPC4_WD40 Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 Beta-prop_DCAF12 Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_RIG_1st Beta-prop_ACSF4 F-box WD40_MABP1-WDR62_1st Beta-prop_VPS8 PQQ_2 Ge1_WD40 Beta-prop_IFT140_2nd Beta-prop_LRRK2 Beta-prop_NWD2_C Beta-prop_IFT140_1st KNTC1_N CDtoxinA eIF2A Beta-prop_pof12 PALB2_WD40 Beta-prop_WDR19_2nd Vts1
Other DBs
NCBI-GeneID: 105903991
NCBI-ProteinID: XP_012687259
Ensembl: ENSCHAG00000017560
UniProt: A0A6P3W1P8
LinkDB
Position
22:complement(4436387..4569785)
AA seq 609 aa
MLRHCPIPRFASSRKKMPKASGKEKAPKAPLECPTLGSEVAKEPVPPQKVLKIFRINIIA
HGLPFCRRQMKRKLDHGPEVRPFPAGKKPYKGPEYPSPTGLVPYSGTPTTFGAIRAANGQ
GQQRRRITSIQPPSGLQEWLRTFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQR
DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCREEGIDEPLHIKR
RKVIKPGFTHSPWKSAYIRQHRIDTNWRRGDLRSPKVLKGHDDHVITCLQFCGNRIVSGS
DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY
GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA
YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGVHVVSGSLDTSIRVWDVETGNCIHTLT
GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPHKHQSAVTCLQFNKNFVI
TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL
VLDFDVDMK
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgctccggcattgccctattccccgctttgcgtccagccgaaagaagatgcctaaagcc
tccggcaaagagaaggcccccaaggcacctttggaatgtccgactttgggctcggaggtg
gccaaagagcctgtacctccacagaaagtgctcaagatctttagaattaacatcatcgcc
cacggactccctttctgtcgccggcagatgaagagaaagttggaccatggtcccgaggtc
cgacccttccctgcagggaagaaaccctacaaaggcccggagtacccaagccccacaggg
cttgtcccgtactctggcactcccaccacgttcggggccatccgggcggccaacggccag
ggccagcagcggcggcgcatcacctccatccagccccccagcggcctgcaggaatggctc
cgcacatttcagagctggagtggtccagagaagctgctggcattggatgagttgatagac
agctgtgagcccacacaggtgaagcacatgatgcaggtgatcgagccgcagttccagcgt
gacttcatctcactcctgcccaaagagctggcgttgtatgtgctgtcgttcctggagccg
aaggacctgctgcaggcagcacagacgtgtcgctactggcgcatcctggcagaggacaac
ctgctgtggagggagaagtgcagggaggagggtattgatgagcctctgcacatcaaacgg
cggaaagtgatcaaacccggtttcacgcacagtccctggaagagtgcttacatcaggcag
cacagaatagacaccaactggaggagaggagacctccgatcacccaaggtgctgaagggc
cacgacgatcacgtgatcacctgtctccagttctgtgggaaccgcatcgtcagtggctcc
gatgacaacacgctcaaagtgtggtcagcagtcaccggaaagtgtttgcggacgttggtg
ggccacacaggtggcgtgtggtcgtcccagatgagggacaacatcatcatcagcggctcg
acggaccgcacgctgaaggtgtggaacgccgagacgggggaatgtatccacacgctgtac
ggacacacctccactgtgcgctgcatgcacctgcacgagaaaagggtggtgagtgggtcc
cgggacgccacgctgcgtgtgtgggacatcgagacgggtcagtgcctgcacgtgctcatg
ggccacgtggcggcggtgcgctgtgtgcagtacgacgggcgcagggtggtgagcggcgcc
tacgacttcatggtcaaggtgtgggaccctgaaaccgagacctgcctgcacacgctgcag
ggccacaccaacagagtctactccttacagtttgacggtgtccacgtggtgagcggctcg
ttggacacgtctatccgcgtgtgggacgtggagacggggaactgcatccacacgctcacc
gggcaccagtccctcaccagcggcatggagctcaaggacaacatcctggtgtctggcaac
gccgactccaccgtcaagatctgggacatcaagacgggccagtgcctccagacacttcaa
ggtccccacaagcaccagagcgccgtcacgtgcctccagttcaacaagaactttgtgatc
accagctcggacgacggcacggtgaagctgtgggacctgaagacgggcgagttcatccgc
aacttggtgacgctggagagcggcggcagcggcggcgtggtgtggcgcatccgtgcctcc
aacaccaagctggtgtgcgccgtgggcagccgcaacggcacggaggagaccaagctgctc
gtgctggactttgacgtggacatgaagtga

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