Clupea harengus (Atlantic herring): 105904454
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Entry
105904454 CDS
T09045
Symbol
mmp13a
Name
(RefSeq) collagenase 3a
KO
K07994
matrix metalloproteinase-13 (collagenase 3) [EC:3.4.24.-]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105904454 (mmp13a)
Peptidases and inhibitors [BR:
char01002
]
Metallo peptidases
Family M10
105904454 (mmp13a)
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GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Reprolysin_3
DUF4953
Reprolysin_5
Reprolysin_4
Motif
Other DBs
NCBI-GeneID:
105904454
NCBI-ProteinID:
XP_031428251
Ensembl:
ENSCHAG00000016910
UniProt:
A0A6P8FXN4
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Position
8:complement(23309352..23314787)
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AA seq
472 aa
AA seq
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MTPHSIWILLALTAAALSVPLPSLLATEESDGEVAEKYLQRFFNLTEKSTPSSRRGVSAQ
SRILSEMQSFFRLKVTGLLDSDTLEVMKKPRCGVPEVARYSTFGQNLKWQTNKLTFRIVN
YTPDMPQSDVDNAIEKALQVWARVTPLRFSRIYAGTADIMISFGSRDHGDFYPFDGPDGT
LAHAFAPSQGIGGDAHFDDDETFTFRSSRGYNLFLVAAHEFGHSLGLSHSRDPGALMYPV
YSYRDPTTFVLPRDDVNGIQSLYGSNPDVSVVKPEPEGPTTPNACDPQLVLDAVTTLRGE
MFFFKDSFFWRSSTYSRRAEQHLIKSYWPDGPNNIDAAYESRSADRVFLIKGRKVWSLYG
YTVERGYPKSLKSLGLSKSVRKVNAAFHDQESGKTIFFVGDYYYSYDESRRVMDRGYPKR
VDEGFPGMTGEVTAAFQHRGFTYIFSGPQMFEYSFRSKRLFRVLRNSYFLRC
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaccccccacagcatctggatactattagcactgacagcagcggctctctccgtccca
ctgccgtccctattagccactgaggagagcgatggcgaggtggcagagaaatacctgcag
aggttcttcaacctgacagagaagtcgaccccctcaagcagacgtggggtgagcgcgcag
agccggatcctgagtgagatgcagagtttcttcagactgaaggtgactgggctgctggac
tccgacacgctggaggtcatgaagaaacccaggtgtggcgttcctgaggtggcacgctac
agcaccttcggccaaaacctcaaatggcaaacaaacaagctcacattcaggattgtaaac
tacacgcccgacatgcctcagtctgacgtggataatgcaatcgagaaagccctgcaagtc
tgggcacgcgtgactcccctgaggttcagccgtatctacgctggcacggcggacatcatg
atctcctttggcagcagagaccacggagatttctacccattcgatggaccagatggcact
ttggctcatgcgttcgcaccgtctcagggaatcggaggggatgctcatttcgatgacgac
gagaccttcaccttccgttcctctcgtggttataacttgttcctggtggctgcccatgag
tttggccattctctgggtctgtcccactcccgggaccccggcgccctcatgtaccccgtc
tacagctacagggaccccaccacgtttgtgttgcctagagacgacgtcaacgggattcag
tctctctacggttccaaccctgatgtcagcgtagtgaagcctgaaccagaaggtcccacc
actccaaacgcctgcgacccccagctggtcctggacgccgtcacaactctgcgtggggag
atgttcttcttcaaggacagtttcttctggcgcagctctacatacagcagaagagctgag
cagcacctcatcaagagctactggcctgacggccccaacaacatcgacgcagcttacgag
agccgctcagcagacagagttttcctcatcaaaggcagaaaggtgtggtctctgtatggc
tacaccgtggagaggggctacccaaagagcctcaaaagcctgggtctgtccaagtctgtg
aggaaggtcaacgctgccttccatgaccaggaatctggcaagaccatattctttgttggc
gattactactacagttatgatgagagccggagagtgatggacaggggttaccccaaacgg
gtggacgaggggttccctgggatgacaggagaagtcaccgccgcctttcagcacagaggc
ttcacctacatcttcagtggcccccagatgtttgagtacagcttcagaagcaagaggctg
tttcgcgtactgaggaacagctatttcctaaggtgttaa
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