Clupea harengus (Atlantic herring): 105905076
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Entry
105905076 CDS
T09045
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3 isoform X1
KO
K03174
TNF receptor-associated factor 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04620
Toll-like receptor signaling pathway
char04621
NOD-like receptor signaling pathway
char04622
RIG-I-like receptor signaling pathway
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
105905076 (traf3)
04621 NOD-like receptor signaling pathway
105905076 (traf3)
04622 RIG-I-like receptor signaling pathway
105905076 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105905076 (traf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
TRAF3_RING
FPP
zf-C3HC4
Sina_ZnF
TelA
EzrA
GAS
zf-C3HC4_2
Crescentin
ATG16
Rx_N
Occludin_ELL
MscS_porin
zf-C3HC4_4
bZIP_1
DUF4349
DUF1664
FapA
Spc7
V_ATPase_I
TSC22
Sec3_CC
Fmp27_WPPW
Exonuc_VII_L
Sipho_Gp157
DNA_topoisoIV
Mod_r
AAA_13
Motif
Other DBs
NCBI-GeneID:
105905076
NCBI-ProteinID:
XP_012688507
Ensembl:
ENSCHAG00000013815
UniProt:
A0A6P3W539
LinkDB
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Position
14:complement(6504663..6521721)
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AA seq
568 aa
AA seq
DB search
MSAGRAVELQVALQRAPLSVSSLAQRPWPDAGFLPVHAGFRDRFVETPEAKYCCEDCRLV
LCQPRQTECGHRFCDTCINSLLSKPNPVCPADKEPLFEDKIFRDVCCHREIMALKVYCRS
QKNGCQEQMSLQQVMDHLNVCPYYEVPCPLGKCKERMMRKDIPDHLSWKCKYRETTCEFC
KHKMALTELQKHKETVCPAFPVSCPNHCSFPSILRSELPSHQHDCPKAQVCCPFSRFGCT
FKGLNQDMREHESSFASEHLRMMAARNTTLEAKMEDVKDELQERYKVLPGLNMRIETLEK
HYEDMREKNRQLEQKLAAMQKLMSSHTEKLLEVEMELRTLRTVREEVETLRNSLETIRTR
VNSLELGRGTASSGTHTLGSLETLVSRHDDMLSVHEVRLADMDLRFQVLETASFNGTLIW
KIRDYKRRKQEAVASKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRG
EYDALLPWPFKQKVTLMLMDQGPPRKHLGDAFKPDPNSSSFRRPTAEMNIASGCPLFVSQ
PVLENGTYIKDDTIFIKVTVDTSDLPDP
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggggcgtgctgttgaactgcaggtggcgctgcagcgagcgcctctgtctgtc
tcctccctggcccagcggccgtggcccgacgcgggcttcctgccggtgcacgccggcttc
cgcgaccgcttcgtggagacccccgaggccaagtactgctgcgaggactgccgcctggtg
ctgtgccagccgcgccagaccgagtgcggacaccgcttctgcgacacctgcatcaacagc
ctgctcagtaaacctaacccagtgtgtccagctgataaggagccgttatttgaggacaag
atcttccgggacgtgtgctgtcacagggaaatcatggctctgaaggtgtactgtcgcagt
cagaagaatggctgccaggaacagatgagtctgcaacaggtcatggatcacctgaacgtg
tgtccgtactatgaggtgccgtgtccactggggaagtgtaaggagcgcatgatgaggaag
gacataccggaccacctgagctggaagtgcaaatacagagagaccacctgcgagttctgc
aaacacaagatggcactgactgaactacagaaacacaaagagacagtgtgtcctgctttc
ccagtgtcctgtcccaatcactgctcctttccatccattctcagaagcgagcttcccagc
caccagcatgactgtcccaaggctcaggtgtgctgccccttctcccgtttcggatgcact
ttcaagggtcttaaccaggacatgagagaacacgagtccagctttgcctctgaacacctg
cgcatgatggcggccaggaacactacactagaggccaagatggaggacgtgaaggacgag
ctccaggagcgctataaggtcctgcctggcctgaacatgcgcatagagacgctggagaag
cactatgaagacatgagggagaagaacagacagctcgagcagaagttagctgccatgcag
aagctgatgagctcccacacggagaagctgctggaggtggagatggagctgaggactctg
cggacggtgcgggaggaggtggagacgctcaggaactccctggagaccatccgcacccgc
gtcaacagcctggagctggggcgggggactgccagctctgggacacacacgctaggctcc
ctggagacgctggtgtcccgacacgacgacatgctgtcggtgcacgaggtgcgcctggcc
gacatggacctgcgcttccaggtcctggagacggccagcttcaacggcacgctcatctgg
aagatccgcgactacaagcgacggaagcaggaggcggtggcctccaagacactctcgctc
tacagccagcccttctacacgggctacttcggctacaagatgtgcgcacgcgtctacctg
aacggcgacggcatgggcaagggcacgcacctgtcgctcttcttcgtggtgatgcgcggc
gagtatgacgccctgttgccctggcccttcaagcagaaggtgacgctcatgctcatggac
caaggccccccgcgcaagcacctgggcgatgccttcaaacccgaccccaacagcagcagc
ttccgccgacccacggccgagatgaacatcgcctcgggctgcccgctcttcgtgtcgcag
cccgtgctggagaacggcacctacatcaaggacgacaccatcttcatcaaggtcaccgtg
gacacctccgacctgcctgacccctga
DBGET
integrated database retrieval system
