Clupea harengus (Atlantic herring): 105905650
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Entry
105905650 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger protein GLI2
KO
K16798
zinc finger protein GLI2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
105905650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105905650
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
105905650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_15
zf-C2H2
zf-H2C2_2
zf-C2H2_4
Zap1_zf1
FOXP-CC
Motif
Other DBs
NCBI-GeneID:
105905650
NCBI-ProteinID:
XP_012689133
UniProt:
A0A6P3W3Q0
LinkDB
All DBs
Position
21:complement(22708132..22808154)
Genome browser
AA seq
1520 aa
AA seq
DB search
METNTASEKEKRECKPSILDGHSFSDLPKKPSPTVTRAPQHMFPTFHTPIPIDMRHHEGR
YHYEPHALHAMHGGPGLAGSPVLSDISLIRLSPSGVEPAFAPPHPYVSPHMEHYLRSVHS
SPTLSMISAARGLSPAEVAHEHLKERGLFGLPPPPGANPAEYYHLMASHRNPYGELLMQS
AGSAAAHLPDYISPVDVSRFSSPRLTPRLSRKRALSISPLSDASIDLQTMIRTSPNSLVA
YINNSRSSSAASSSYGHLSVGGISPSFAFPHHINPMAYQQLLSQQRGLGTFGHNPPLIQP
PPTFSARQHHALGISALQTSALHSDSEAKNMSGDSAVSSTVNPLITKRSKVKSEVECPRP
LSPCSPDHLGGMLDLKEDLDKDECKQEPEVVYETNCHWEGCSKEYDTQEQLVHHINNEHI
HGEKKEFVCRWEECSREQKPFKAQYMLVVHMRRHTGEKPHRCTFEGCPKAYSRLENLKTH
LRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYVCKIPGCTKRYTDPSSLRK
HVKTVHGPEAHVTKKQRNDVPRPPPHHENGENEASSKQTGGRGGGDTEGGNGTPRGMDDY
LQVKSIKTENSVMYQSSPGGQSSCSSEPSPLGSATNHDSGVEMVLHSGGSAGDLSALDEP
SPDVDSSPASAGTLSVGLHLRKYTCATLKLEHLKKEKLKTVRDSCPWAGMSPQARNAKLP
PLSTSGSIMESSGSSVPPGQIMGPRLSDLCPGEVTVLSRLNERRDSTSSTISSAFNLSRR
SSGFSQCYSSRRSSGASQFGSSSAGGGRLNNLSSADSYDPISADLSRRSSESSQGAPVFL
SLTPAQHYRLKAKYAAATGGAPPTPLPNMERMSLKNRVALMGDPGESSVRGYPFGHAPSV
PRRCSDSGYANASMMPHEAPERLPRRASDPVRRAGLEPLAPPPQRFNSLSHMAPQQPMGV
AERHQLNLQGYMHSDGNGNLGNGNQCTPYAPRPPSITENVAMETLACNQNGGEDELMLPD
DVVQYITSQPTQNTPMTGFAHQTQDFHGNQLPQKQPPQQQQQQQQQQQQPCFYQRRMAMV
DANMNISPARQAPLSHTTPHGTQGQQGHPPSPGSGRTSLPVQWNEVSSGSGSADASPGQP
KQSFARERENLAAVQQKHNLGLCQNLSPNQQVRPMSQNLPHHHHHHQGFSTQRGGVEFGS
QRGNCIQAQRQQQQQQQPADNHNEQVRLQHDYRALVSGDVNGNATQYPPYGPLAGSTAGL
VGTGSARLSQQPSDVQNNRLRTQPVARQGCVTFETNQENYSQMNLNQKNYGTPAQLPLLH
GNQGVVQPRPPTEPKTSSQRLSGPNTTQQPGFPQSAFSPGYSSSEASPKKPSATTHGVTD
GDNNNALFYTGQIHVFESDNLNLQMTSCTRDNAVDSLVVTMASPGTNQVSSTVDSTHEAE
QPQIDFDTLLDDGDNASLMSGTISPSILRSVSQSSSRLTTPRNSVTLPSVPAGVGNMAIG
DMSSMLSALAEESKFLNMMS
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaacacagcctcagagaaagagaagagggagtgtaagccctccatcttggac
ggacacagcttcagcgacctgcccaagaagccctcacctacagtgacccgagccccccag
cacatgttcccgacgttccacactcccattccgatcgacatgcgtcaccacgagggccgc
taccactacgagccccacgccctccatgccatgcacggtggccccggtctggctggcagt
cccgtcctctcggacatctccctgatccgcctgtctcccagcggggtggagcctgccttt
gcgcccccgcacccctacgtgagcccccacatggagcactacctgcgctccgtgcacagc
agccccaccctctccatgatctccgccgcacgcggactcagccccgcagaggtggcccac
gaacacttgaaggagcgcgggctcttcggcctgcccccccctccgggggcaaacccggcc
gagtactaccacctgatggccagccaccggaacccctacggggagctcctgatgcagagc
gcggggtcagccgccgcccacctgcccgactacatcagccctgtggacgtgtctcggttc
tccagccctcgcctgacccctcgtctgagccgcaagagagccctgtccatctcgcccctc
tcggacgccagcatcgacctgcagaccatgatccgcacctcgcccaactccctggtggca
tacatcaacaactcccgctccagctccgccgccagcagctcctacgggcacctctctgtc
gggggcatcagtccatccttcgccttcccccaccacatcaaccccatggcgtaccagcag
ctcctgtcccagcagaggggcctgggcacgttcgggcacaacccgcctctcatccagccc
ccgcccaccttctccgcccgtcagcaccacgccctgggcatctccgccctgcaaacctct
gccctccacagcgactcggaggccaagaacatgagtggcgactcggccgtcagcagtacc
gtaaaccccctgatcaccaaaaggtcaaaggtgaagtcggaggtggagtgtcctcggccc
ttgtccccctgctcgccggaccatctgggtgggatgctggacctgaaggaggacctggac
aaggatgaatgcaagcaggagccggaggtggtgtacgagaccaactgccactgggagggc
tgctccaaggagtacgacacccaggaacagctggtccatcacatcaataacgagcacatc
cacggggagaagaaggagtttgtgtgtcgctgggaggagtgttcccgggagcagaagccc
tttaaggcccagtacatgctggtggtgcacatgaggagacacacaggggagaaaccacac
aggtgcacttttgagggttgccctaaagcctactcccgcctggagaacctgaagacccac
ctgcgctcccacaccggggagaagccctacgtgtgtgagcacgagggctgcaacaaggcc
ttctccaacgcctcggaccgagccaaacaccagaaccgcacacactccaacgagaaaccg
tacgtgtgtaagatccccggctgcaccaagcgctacacggaccccagctctctcaggaag
cacgtgaagaccgtccacggccccgaggcccacgtgaccaagaagcaacgcaacgacgtg
ccccgtccaccgccgcaccacgagaacggcgagaacgaggctagctccaaacagacgggg
ggacgcggcggaggagacacagagggaggcaacggcacccccagaggcatggatgactac
ctgcaggtcaagtctattaagacggagaactctgtgatgtatcagtccagccctggcggt
cagtcatcatgcagcagtgagccgtcgccacttggcagtgccaccaaccatgacagtgga
gtagagatggtactgcacagcgggggcagtgcgggcgacctgagcgccctcgacgagccc
tcgcccgacgtggactcctcccccgcctccgctggcaccctgtcggtcggcctccacctc
cgcaagtacacctgcgccacactcaaactggaacacctcaagaaggagaagctgaagacg
gtgagggactcctgcccctgggccggcatgtcaccccaggcccgcaacgccaagctgccg
cccctgtcaaccagcggatccatcatggaaagttccggcagcagtgtcccccccggacag
atcatgggcccccgacttagcgacctttgccccggtgaggtgaccgtcctgagccgtctg
aacgagcggcgcgacagcaccagcagcaccatcagctcggcgttcaacctgagccgccgc
tcgtctggcttctcccagtgctactcgagtcgccggtccagcggagcgtcgcagttcggc
agcagcagcgccggcggcgggcgcctcaacaacctcagctcggccgactcctacgacccc
atctccgctgacctgtcgcgccgttccagcgagtccagccagggggcgccagtgttcctc
agcctcacccccgcccagcactaccgcctcaaggccaagtacgccgccgccacggggggc
gccccgccgaccccgctgcccaacatggagcgcatgagcctcaagaaccgcgtggcgctg
atgggggaccccggcgagtcatccgtgagggggtaccccttcggccacgcgccctcggtg
cccaggcgctgcagcgatagcggctacgctaacgcgagcatgatgccgcacgaggcgccg
gaacggctaccaagaagggccagtgaccccgtgagacgggcagggctggagcctctggcg
ccgccccctcagcgcttcaacagcttgagtcacatggccccccagcagccaatgggggta
gccgagcgccatcaactgaacttgcaggggtacatgcattcagatggtaacggtaacctc
ggtaacggtaaccaatgcacgccctacgctccccgcccccccagcatcactgagaacgtt
gccatggagaccctggcctgcaaccaaaacggcggcgaggatgagctgatgctgccggat
gacgtggtgcagtacatcacatcccagccgacccagaacaccccgatgaccggtttcgcc
catcagacgcaggatttccacggaaaccaactcccccagaagcagccacctcagcaacag
cagcagcaacagcagcagcaacagcagccatgtttctaccagagaagaatggccatggtg
gatgccaacatgaacataagccctgccagacaggccccgctctctcacacgaccccacat
ggcacacaggggcagcaggggcatccgccgtcgccgggctcgggcagaaccagcctgccg
gtgcagtggaacgaggtcagctccggctccggatcggcagacgcttctcccggccaaccc
aaacagagcttcgccagggagcgggagaacctggccgccgtccagcaaaaacacaacctg
ggcctctgccagaacctgagcccaaaccagcaggtccgaccaatgagccagaacctgccc
caccaccaccaccaccaccaaggcttcagcacacagaggggcggcgttgagttcgggtcc
cagagggggaactgcatccaggcacagaggcagcagcagcagcagcagcagccggcggac
aaccacaacgaacaggttcggctccagcacgactacagggccctggtctcgggcgacgtg
aacggcaacgccacacagtacccgccctacggacctctggcaggaagtacggcaggttta
gtgggcacgggcagcgcgaggctgagtcagcagccctcagacgtgcagaataacaggtta
aggactcagcctgtggcgaggcagggctgtgtcacttttgaaactaatcaggaaaattat
tcccagatgaacctcaaccaaaagaattacggcacgccagcccagcttcctctgctgcac
ggaaatcagggggttgtgcagccaaggccgcccacagaacccaaaacctccagccagcga
ctttcagggccaaacacaacgcagcaacctggcttcccacagtcggccttcagtcccggt
tacagctcctccgaagccagccccaaaaagcccagcgcgacgacccacggcgtgacggac
ggcgacaacaacaacgccctgttctacactgggcagatccacgtgtttgagtcggacaac
ctgaacctgcaaatgacttcctgcacgagggacaacgccgtcgactcactggtcgttacc
atggcttctccggggaccaatcaggtgtcgagtacggtggactccacccacgaagcggag
cagcctcagattgacttcgacacgctgctcgacgacggcgacaacgccagcctcatgtct
ggcaccattagccccagtatcctccggagcgtatcccagagttcctctcgcctcaccacg
ccccgcaactccgtcacgctgccctcggtcccggcgggagtcggcaacatggccatcgga
gacatgagctccatgctgtcggccctggccgaggagagcaaattcctcaacatgatgtct
taa
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