Clupea harengus (Atlantic herring): 105907384
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Entry
105907384 CDS
T09045
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105907384 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105907384 (smg6)
03032 DNA replication proteins [BR:
char03032
]
105907384 (smg6)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105907384 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
105907384 (smg6)
DNA replication proteins [BR:
char03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
105907384 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
105907384
NCBI-ProteinID:
XP_031427495
Ensembl:
ENSCHAG00000010716
UniProt:
A0A6P8FVS3
LinkDB
All DBs
Position
8:complement(6419842..6441663)
Genome browser
AA seq
1715 aa
AA seq
DB search
MFVLDRDRWRPGTTRTKMAEELDRVRISAAELRAEATTLVTRRENNKDLREDGKRQRQRE
VKRPDIQRYHPGAGHRRKESVEADDSPQSPSQPVLTPYMDEAMSKLETPALGTVGSHSSP
KPRVHRESSCQDEDMSSTEQRLLDSVLSNNSTESKGTEASGRKGAVKEAQGSDPGTRKTR
KPDRQIYQAGSRRSKDFKDSGPNKDPEKGTVDVEHSGPSSEMEKGSREAELGHTDENKQE
SQPAGKPRDREENRGSSEVQGKGREENRGSSEVQGKGREENRGSSEVQGKGREEKGRGRR
SKDSNRRQEQGKPGKRDGGTSGVSHEDAACVDTLMSKVEKLSMGDCPEIETEGKRGGDGE
EGQNRRRKSGNEGRKGRTSVSGAEVTTTPEGGSSKKKDKGTRRPRGGERASQSDSAKRDP
VEAEKGKSVEMAPEVGMLRQAKGRDKQQQQQRDSDRPQPRDNRFKKKDGDAERVTEEGDR
SKANRPKAVTPSKRYSKSDIRRARNRTCSTSSASSGTSLDGPLEGDMRRALPGRGGIRDR
VEVGSRGSAPPISTSRATGERGDGRRPNANHQRRRTNRDVSSSDSHDEFGWQKGRPRKTR
GSDEDWSPERTPEKSGRGQRGGSVGGRGGILRVAVNRQTGSSHAVPASGEDQPNRRQSEL
PRGRGRGILVLPAHTDLTRSPEPGPKLFGGLKWGRGRGGRGGGTRRLWDPNNPDQKPALA
ARSQLSQHGVAQHPLYMMPHGGYGPLQFLDTDDEATGSPPVRKGEHFQGHPASAMAYYKF
QNSDNPYCYPVPADASGTPPRYAYPYPVPYSGEVYPSPPFYNSYGPAGPGMVSAGPLLSP
EEAEEQARGELGRLLRSVVSQELQLSNLLSRDHISLEGLERMAQFRAELLAMYERVILTD
IEFSDSQNLDQALWKNVFYQVIERFRQMMKDSPTDTPPYVRNMLFTVLDEGAAFFDALLQ
KLQTVFQFKLEDYMDGMAIRARPLRKTVKYALISGQRCMICQGDIARYREQATDSANYGK
ARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMGLF
EEAKRKADDVERRKQQESEGASRGARGRGAGTGAGGAGGGGGGGGGRGSMDATREEIWIR
PSRQPRGSWPESESGKDSDLDGELGTLGSRDLQKRFILSFLHAHGKLFTKVGMETFPAVA
ARVLQEFRVLLQHSPSPLGSTRLLQIITINMFTIHYAQSRDGDGDVRSIHQEQATALGLA
MFGLLVQRCSQLVREVPTDSVCVDGCDVGSNCTDCAVEKMMRVSAFSPDLRELLPSAKVW
SDWMLGHPEHWNPPPNSMESSPSVWVWLAELCNDLARVYHDEAALYKHGEEGEGEGEGEE
DEELNLLLLQEDLLLAGFVPLLAAPQEPCYMDRSTDKANAADCKRITQLKYFLEALCGQE
EPLLAFKGGKYVSMVKAPASTSEEQQKESQSDDVIVEAESSGSEADLGLEAELADGSEND
IKELRARRHALTQELAQQQKRRDKIQEVLQTCRRLELRIQPVYLVPDTNGFIDHLVGLRS
LVACGLYVVVVPLIVITELDGLAKGQQDARDGGAHARHVQEQAREAVAFLEKSFEAREPC
LQALTSRGSQLDSIAFRSEDISGQKGTNDDVILSCCLHYCKDKPKDLVPAQKDGKVRLRR
EVVLLTDDRNLRVKALTRNVPVREIPAFLRWAKVG
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgttggatcgagaccgatggagacctgggacgacgaggacgaagatggcggag
gagctagatagagtacgaatatccgctgctgagctacgagcagaagctacaacgttggtc
acacgtcgagaaaataacaaagatttacgagaagatggcaaacggcagagacagcgggag
gtaaagcgtccagatatacagcgctaccatccgggtgcagggcacagacgcaaagagagc
gtagaggcggacgactcaccgcaaagcccatcccaaccggtccttactccatatatggat
gaggcaatgtcaaagctggaaacgccagccttggggacagtgggatctcacagtagcccc
aagcccagggttcacagggagtcaagctgtcaggacgaagatatgtcatctactgagcaa
cgattattggattctgtccttagcaacaacagcactgagagcaaaggcacagaagcttct
ggcaggaagggtgctgtgaaggaagcacagggttctgaccctgggactcgaaaaacacgc
aagcctgaccgtcagatataccaggccggaagccgcaggtcaaaggacttcaaagactct
ggtcctaacaaggacccagagaagggcaccgtggatgtagagcactctggcccgagcagt
gagatggagaaggggagtagggaggcagagctaggccacacggacgagaacaaacaggag
tcgcagcctgccggaaagcccagggaccgggaggagaacagaggctcgtctgaggtgcag
gggaaagggagggaggagaacagaggctcgtctgaggtgcaggggaaagggagggaggag
aacagaggctcgtctgaggtgcaggggaaagggagggaggagaagggaaggggcaggcga
agcaaggactctaacaggaggcaagagcaagggaagccggggaaaagagacggagggacg
tcaggtgtgtcccatgaggacgcagcttgtgtggacaccttgatgagcaaagtggagaag
ctgagcatgggtgactgtcctgagatagagacggagggaaagaggggaggggatggcgag
gagggacagaacaggagacggaaatcgggcaacgaaggcaggaagggtcgaactagtgtg
agtggagctgaagtgaccacgacgccggagggtggcagcagcaaaaagaaggataaggga
acccgccgaccaagaggaggggagagagcgtcccagtcggactctgcgaagagagacccc
gtggaggcagagaaggggaaaagcgtagagatggccccagaagtaggcatgcttagacag
gccaaggggagagataagcagcagcagcagcagagagattctgacaggccacaacctagg
gacaacaggttcaaaaagaaggatggcgatgcagaaagggtcacagaagagggtgaccgg
agcaaagcaaacaggcccaaagcagtcacgccatcgaagcgctattccaaatctgacatc
cggcgggctagaaaccggacttgcagcaccagctcagccagtagtggcaccagcctcgat
gggccactagagggcgatatgcgcagagctctacccgggcgtgggggaattcgggaccga
gtagaggtggggtccagggggtcggcgccccccatctccactagcagagcaacgggagaa
aggggagatggaagacggcctaacgccaaccaccaaaggagacggacgaacagagacgtc
tcttcctctgactcccatgatgagtttggttggcagaaggggcgtcctcggaaaacgagg
ggcagtgatgaagactggagcccagaacggaccccggagaaatcgggcaggggccagaga
ggaggctccgttggtggcagaggtgggatcctgagagtggcggtgaacaggcagaccggt
tcttcccacgccgtcccggcatccggtgaagaccagcctaacaggaggcagagcgagttg
cctcgaggaagaggcaggggcatcctggtgctgcccgctcacaccgacctcaccaggtcc
cccgaaccggggcccaagctctttgggggattgaagtggggcagaggaagaggaggtcgc
ggaggcggcaccaggagactctgggaccccaacaaccccgaccagaagcctgccctggct
gcccgcagtcagctctcccagcacggcgtcgcccagcaccccctatacatgatgccacac
ggtggctacggccccctgcagttccttgacactgatgacgaagccaccggaagtcctcca
gtccgcaagggggagcacttccaaggccaccccgcctcagccatggcctactacaagttc
caaaactcggacaacccctactgctacccggtgcccgccgacgcctctggcactcccccg
cgctacgcttacccctaccccgtgccctactccggggaggtctacccgtccccccccttc
tacaactcctacgggccggccgggccggggatggtgtccgcggggcctctgctgtctccg
gaggaggctgaagagcaggcgaggggggagctgggcaggctgctgaggtcggtggtctct
caggagctgcagctgagcaacctgctctcccgcgaccacatcagcctggagggcctggag
cgcatggcacagttcagggcagagctgttggcgatgtacgagcgagtgattctgaccgac
attgagttctccgactctcagaatctcgaccaggcactgtggaagaacgtgttctaccag
gtgattgagcgtttccgtcagatgatgaaggactctcccacggacactcctccttatgtg
cgcaacatgctcttcaccgtactggatgagggggcagcgttctttgatgcgctgctgcag
aaactccagactgtgttccagtttaagctggaggactacatggacggcatggccatacgg
gcacgtcctctgaggaagacggtgaagtatgccctgatcagtggtcagaggtgtatgatc
tgtcagggtgacatcgccaggtacagggagcaggccactgactctgccaactacggcaag
gcccgcagttggtacctgaaggcccagcagatagcccccaaaaatggccgcccgtataat
cagctggccctactggctgtctacacgaagcgtaagctggatgcggtgtattactacatg
cggagcctggctgccagtaaccccatcctcacggctaaggagagccttatgggtctgttt
gaggaagccaaacgcaaggcggatgacgtggagcggcgcaagcagcaggagtctgagggg
gcgtcccgtggggcgcgggggcgaggtgcaggaacgggggctgggggcgcaggaggagga
gggggagggggaggggggcgaggcagcatggatgccacaagggaggagatatggatccga
ccgagccggcagcccagaggttcctggcccgagagcgagtccggaaaagattccgatcta
gacggagagctgggaacacttggctccagagatcttcagaagaggtttatcctcagtttc
ctgcacgcccatgggaagctcttcactaaagtcggcatggagacatttcctgctgtagcg
gctcgggttcttcaggagttccgggtcctcctgcagcatagcccctcccctcttggaagc
acacgcctactccagatcatcaccatcaacatgttcactatccactatgcacagagcaga
gatggagatggggatgttcggtccatacatcaggagcaggccacagctctggggttggcc
atgttcgggctgctggtgcagcgctgctcacagctggttagagaggtacctacagactct
gtgtgtgtggacggctgtgacgtgggctctaactgcaccgactgtgccgtggagaagatg
atgagggtgtctgccttctcccctgacctccgagagctcctgcccagcgccaaggtctgg
tccgactggatgctgggccatcccgagcactggaaccctccgccaaacagcatggagagc
agtcccagtgtgtgggtctggctggctgagttgtgtaatgatctggcacgtgtgtaccat
gacgaggcggcgctctacaagcatggggaggagggcgagggggagggggagggggaggag
gatgaggagctcaacctgctcctgctgcaggaagacctcctgctggccggctttgtgccg
ctcctcgccgctcctcaggagccctgctacatggaccgcagcactgacaaggctaatgct
gcggactgcaagcgcatcacccagctgaagtacttcctggaggccttgtgtggacaggaa
gagcctttactggccttcaaaggagggaagtacgtttccatggtgaaggcccctgcatca
accagtgaggagcagcagaaggaaagccagagtgatgatgtcatagtggaagcggagtcg
tctgggtcggaggcggacttggggttggaggcggagctagcggatggcagtgagaatgac
atcaaagagctgagggccagacgccacgccctcactcaagagctggcccagcagcagaaa
cgcagagacaagatacaggaggtgctgcagacgtgtcgtcgcctggagctgcggatccag
ccggtgtacctggtccccgacaccaacggcttcattgaccacctggtgggcctgaggagt
ctggtggcctgcggcctctacgtggtggtggtgcccctcatagtgatcactgagctggat
ggtttggctaagggccagcaggatgcccgtgacggcggtgcccatgcgcgccacgtgcag
gagcaggccagggaggcggtggcgttcctggagaagagctttgaggccagggagccctgc
ctgcaagccctcaccagccggggcagccagctcgactccatcgccttccgcagcgaggac
atctccggacagaaggggaccaatgatgacgtcatcctgtcctgttgtctgcactactgc
aaggacaagcccaaggacctggtgcctgcccagaaagatgggaaggtgcggctgcgcagg
gaggtggttctcctgacggacgacaggaacctgcgcgtcaaggcgcttacgcggaatgtt
ccggtccgtgaaatcccggcgttcctgcgctgggccaaagtgggctga
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integrated database retrieval system
