Clupea harengus (Atlantic herring): 105907408
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Entry
105907408 CDS
T09045
Symbol
tiam1a
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04530
Tight junction
char04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105907408 (tiam1a)
09142 Cell motility
04810 Regulation of actin cytoskeleton
105907408 (tiam1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
PH_9
PDZ
RBD
PDZ_6
SOS1_NGEF_PH
PDZ_2
Peptidase_M30
Motif
Other DBs
NCBI-GeneID:
105907408
NCBI-ProteinID:
XP_031427573
Ensembl:
ENSCHAG00000018070
UniProt:
A0A6P8FGM6
LinkDB
All DBs
Position
8
Genome browser
AA seq
1622 aa
AA seq
DB search
MGNIESQNGDHAYYGTEQGHLSRKHMSRSLRLSNKQSRNSRPASSSTKAEHRNSEASTRS
SSTPSIPQSLAENGLEPFNETDALGEPMWGDHMALNLRPMSFHDHQGDTPMTPASEDSVE
VDTVVQEEEVTYLQRMNDGPREGGSFKKKRSKSADMWREDSLEFSMSDLSQELLTSTEEI
IDGIDDEDTDYPNCGAGEKQGRDAGARANSMDELCTQKTPVLRGQRNRYKYSREGDRTPG
METPDQMLSPTEDDGNGYGAYTLPCRRSHCLSEGLPSHQAPISRMQGRRAQTTHNIAAQD
GSEYGDSGIDGVATEMGLLSRRCKTMSASFSVYSAASSSMFAGSDSGSSSGGGGGGGSGR
SHGADTLLGVYENFRQELDMSSRQTRDALEEGGSAGSDERSSGTLSSIYQSDAALLSAAQ
GTVRKAGALAVKNFLVHKKNKKVETAARRKWKRYWVSLKGCTLFFYETDGRSGIDHNSIP
KHAVWVENSIVQAVPEHPKKDFVFCLSNALGDAFLFQTSGQTELENWITAIHSACAGAVA
RQHHREDTVRLLRGEIKKLEQKIDMDEKMKKMGDMQLSAVTDNKKRKTILEQIFLWEQNL
ERFHVDLFRFRCYLASLQGGELPNPKRLLAFASRPTKLAMGRLGIFSVSSFHALVAARTE
GGVRRRSQALSRSSSKRKSRFSSLWGLDTTSKKKTKGRPSINQVFVDGATPVRKNLGRMF
EDTVKESLKEQEGVEKSPHPTDSEVWVPGYLTPSWVSLPNEKPVLAIIEPGHTALYTLES
VCKTNKLDPSKHYIRLKFTINGQTQFYIPKPEEDVCDMLFKEIEIWPKVTKVIQFDRAES
CVIGYGFSVVVVDEDGTQQLHVTDVKAGGLAAAKAGLRAGDEILHLNGKAAAALELSDMQ
AAFALPSLTLSVSTLPAVDPRHLCTQPPRRAEHDDTLCTDIFSQDQEEILDEGTILAPES
PDDGLGDGSILTSDSPGDSLEDELDADTSPKSTEQVTAFCRSLHDMNPAECPASSSSSSS
SSCAPSPVSPMPTPTPAAMRQLTDAVKLRHVICELVETERTYVKDLKWLMEKYLTPLQNE
SFLTQDELDVLFGNVVEMLEFQVEFLKTLEDGTRLVPDLEKLEKVDHFKKVLFSLGGSFL
YYADRFKIYSAFCASHTKVPKVIAKAKTDPVFKAFLDERNPRQQHSFTLESYLIKPIQRV
LKYPLLLRELHSLTDPESDEHYHLDVAMKAMNKVASHINEMQKIHEEYGAVFDQLINEQS
GEKKEVADLSMGDLLLHATVAWINPPPSLTKGKKEPGLAVFVFRTALVFVYKDSSKHKKK
MGASHRVSTTDEKDPIRFRHMIPTDDLQLRNHSNSDATAVCEIVHVRSESEGRPERTFHL
CCSSPDSKKDFLKTMHSNLRRQLLKTESVPVNQQYIPFGGKRLCALKGARPSLNRAVSAP
TRTLGRRKIVRNRLTIDRDVIFDDDDDTNQSTDHDIDPTTPVPESSSQQEPAPLSHDAPL
PPKDTERWVEQQFDLGRYNNQVKETDILSDDDDYCESVRGPSTEPSVECPVGALSLGPEG
ENGDPHKSKEDALSPVVPERSQGPLKLTPLRKQCAVEGVTEHDREVIWVRRDDFGSPNGD
VF
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacatagagagccaaaatggagaccatgcctactatgggacggagcaaggccac
ctctcccggaagcacatgtctcgctcgctccgcctctccaacaagcagtcgcgcaactca
cgtccggcttcgtcctcaaccaaggccgagcaccgcaactcggaggccagcacgcgctcc
agcagcacgcccagcatcccgcagtctctggccgagaacggcctggagccctttaacgag
acagacgccctgggtgagcccatgtggggggaccacatggccctgaacctgaggcccatg
tccttccacgaccaccagggggacactcccatgacccctgcctccgaggacagcgtggag
gtggacacagtggtgcaggaggaggaggtcacgtacctgcaacggatgaacgacggcccc
cgggaaggcgggagcttcaagaagaagaggagcaaatcggccgacatgtggcgcgaggac
agcctggagttctccatgtcagacctgagccaggagctcttgacgagcacggaggagatc
atcgatggcatcgacgacgaggacacggactaccccaactgtggggcaggggagaaacag
gggcgagacgcaggggcgagggccaactctatggacgaactgtgcacgcagaaaactccc
gtcttgcgggggcagcgcaaccgctacaaatacagccgggaaggagaccgaaccccaggg
atggagacaccagaccagatgctgtcccctacagaggatgatgggaatggatacggcgcg
tacacccttccctgtcgacgctcacactgtctatctgaaggcctgcccagccaccaggca
ccaatctccagaatgcagggcagaagagcacagaccactcataacatcgccgcgcaggac
ggaagcgagtatggcgacagcggcatcgacggcgtggcgaccgagatgggcctgctgtca
cgccgctgcaaaaccatgtcggcctccttctctgtctactccgcagccagcagctccatg
ttcgccggcagcgacagcgggagcagcagcggcggaggaggaggcgggggcagtgggcga
tcgcacggcgctgacaccctcctgggcgtctacgagaacttccggcaggagctggacatg
agctcgcggcagacacgcgatgccctggaggagggcggctcggcagggagcgacgagagg
agcagcggcacgctcagctccatctaccaatcggacgcggcgctgctcagcgccgcccag
ggcaccgtcaggaaggccggcgcgctcgccgtcaagaacttcctggtgcacaagaagaac
aaaaaggtggagacggcggcgcgacgcaagtggaagcgctactgggtctctctgaaaggg
tgcacactcttcttctacgagacagacgggcggtcaggtatcgaccacaacagcattccg
aagcatgcggtatgggtggagaacagcattgtgcaggctgttccggaacatccgaagaag
gactttgtgttctgccttagcaacgccttgggagacgccttcctctttcagacgtctggt
cagacagagctggagaactggatcacggcgatccactcggcgtgcgcgggtgccgtggcc
cggcagcaccaccgcgaggacaccgtgcggctcctgcgcggcgagatcaagaagctggag
cagaagatcgacatggacgagaagatgaagaagatgggggacatgcaactgtccgccgtc
actgacaacaagaagaggaagaccatcctggagcagatcttcctgtgggaacagaacctg
gagcggttccatgtggatctgttccggttccgctgttaccttgccagcctgcaggggggc
gagctgcccaatcccaagcgcctgctggctttcgcctcacgccccacaaaactcgccatg
gggcgcctggggatcttctccgtctcctccttccacgcactggtggcagcacgcacagag
ggaggtgtgcgtcggcggagtcaggccctgtcacgatcctccagcaaacggaagagcagg
ttctcgtctctgtgggggctggacactacctcgaagaagaagaccaaaggccgacccagc
atcaaccaggtgtttgtggacggtgccactcctgtgcggaagaacctgggacgcatgttt
gaggacacggtcaaggagagcttgaaggaacaagagggtgttgagaaaagccctcacccc
acggacagtgaagtttgggtcccaggatacctcaccccctcctgggtgtccttgcctaat
gagaagcccgtgctggccatcatagagcctggacatacggcgctctacaccctggagtct
gtgtgcaagactaacaagttggacccctccaagcactacatacggctgaagtttacgatc
aacggccagacgcagttttacatcccaaagccagaggaagatgtgtgtgacatgctcttc
aaagagattgaaatttggcccaaagtgacaaaggtcattcagtttgacagggctgaatcc
tgcgtcattggatacggtttctcagttgtggtggtggacgaggatggcactcagcagctc
catgtgacagacgtgaaagcgggaggcctggccgccgccaaagcaggtctgcgagctggc
gatgagatcttgcatctgaatgggaaagcagccgcagccctggagctgtcggacatgcag
gctgcgttcgctctgccctccctgaccctgagcgtgagcacgctgcccgccgtcgaccca
cgccacctgtgcacccagcccccccgccgcgccgagcacgacgacaccctctgcactgac
atcttctcccaggaccaggaggagatcctggacgaggggactatcctggccccagagagc
ccagatgatggcctgggcgacggatccatcctgaccagcgacagcccaggggacagtctg
gaggatgagctggatgctgacacatcacccaagagcacggaacaggtcacagcattttgc
cgcagtctccacgacatgaatcctgccgaatgcccggcctcatcttcatcatcctcgtct
tcctcgtgcgctccgagtcctgtctcgcccatgcctacccccacccccgccgccatgcgc
cagctcacggatgctgtcaaactccgccatgtcatctgtgaactggtggagacagagcgg
acttatgtcaaggatttgaagtggctaatggagaaatatctgacacctcttcagaatgag
agctttctcactcaggatgagttggacgtcctctttggaaacgtggtggagatgctggag
ttccaggtggagtttctcaagacgctcgaggacgggaccagactggtgccagatttagag
aagcttgagaaagttgatcacttcaagaaagtcctgttttccttgggcggctcttttctc
tactatgcagaccgatttaagatctacagtgctttctgtgccagccacactaaagtcccc
aaggtcattgccaaagctaagacggaccccgttttcaaggccttcctggatgagcgtaac
cccaggcaacagcactccttcaccctcgagtcgtacctgatcaagcccatccagagggtg
ctgaagtacccactgctcctccgggagctccactccctcacggaccccgagagcgacgag
cactaccacctggacgttgctatgaaagccatgaacaaggttgccagccatataaacgaa
atgcagaaaatccatgaggagtatggtgccgtgttcgaccagctgatcaatgaacagagt
ggagaaaagaaagaggttgctgatctgtcgatgggtgacctgttactgcacgccactgtt
gcttggatcaacccaccaccttctctcaccaaggggaagaaagaaccagggttggctgtt
tttgtgttcagaacggcgctggtttttgtgtacaaagatagctccaagcacaagaaaaaa
atgggggcctcacacagggtgtccaccactgatgagaaagaccccatccgcttcaggcat
atgattcccacggacgaccttcagctcaggaaccacagcaattctgatgccacagccgtg
tgtgagattgtgcacgtccgctcggagtcggagggcaggccagagaggacgtttcacctg
tgctgcagctccccagacagcaagaaggactttctgaagacgatgcactccaacctgcgc
cggcagcttctcaagaccgagagcgtccccgtcaaccagcagtacatcccattcggaggc
aagcggctgtgtgcgctgaagggcgctcggccctccctgaacagagcagtttctgcacca
actcgaactctaggacggaggaagattgtacggaaccgtctcaccattgaccgggacgta
atttttgatgacgacgacgacacaaaccaaagcactgaccacgacatagacccaacgacg
cctgtaccggagtcttcttcgcagcaggaacccgcaccgctatcccacgatgcaccgctg
cccccgaaggacacggagcgctgggtcgagcagcagtttgacctcggacgttataataac
caggtcaaggaaactgacatccttagcgatgatgacgattactgtgagtctgtgaggggt
cccagcacagagccctctgtggagtgtcccgtgggagcgctctccctgggtccagagggg
gagaacggggaccctcacaagtcaaaagaggacgcgttgtcccccgtggttcccgagagg
tcccagggccccctgaagctgaccccactcaggaagcagtgcgccgtggagggcgtcacg
gaacacgaccgcgaggtcatctgggtgcgccgggacgactttggcagccccaacggagac
gttttctga
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