KEGG   Clupea harengus (Atlantic herring): 105907592
Entry
105907592         CDS       T09045                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    105907592
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:char03000]
    105907592
   04121 Ubiquitin system [BR:char04121]
    105907592
   03036 Chromosome and associated proteins [BR:char03036]
    105907592
Enzymes [BR:char01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     105907592
Transcription factors [BR:char03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    105907592
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     105907592
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    105907592
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     105907592
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD JmjC F-box Cupin_8
Other DBs
NCBI-GeneID: 105907592
NCBI-ProteinID: XP_031434161
Ensembl: ENSCHAG00000020351
UniProt: A0A6P8GBQ8
LinkDB
Position
12:7205815..7234852
AA seq 1327 aa
MEACADRGRKLRSICRRMYDENEDFSDVEEIANVRGFSLEEKLESKSYNSNFVQRMDGKD
FTYEYVQREALRTPLIFEVKDGLGIRMPDPDFTVSEIKALVGSRRALDVMDVSTQKGTEM
SMAQFVRYYEMPEEERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDSMWPPHLKKQQ
MESTNIITEMKYPKVQKYCLMSVKGCFTDFHIDFGGTSVWYHVFKGGKIFWLVPPTPHNL
AVYEDWVLSGKQSDFFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIHEIENRTKVRSKFRYPFFYEMCWYVLERYVHCLTRRTHLSPHFRLDTTVA
ATLTETESKQSTESPATDPRLDVLDEDSGDTQGRSACLASDNPCSPQDAQMPTSAMPLSN
ATTPPQKQAPANDSDDGSTHPSEIPRTPCGSPRSEVGSRWTHLTEFELQGLQALVEKLEA
LPDNKRCVPDCIKDPHTLLEHIKVVLKEHATDDPKMAISGVPVVSWPKTTVKRPANRSKP
KTASPSGVGVVKLSGGRGSSGSRRRRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQ
SCIMRQCIAPVLPHTAVCGVCGEAGKEDSAEQVEEKFNLTLMECSICNEIVHPLCLKVKD
ASGVVNDELPNCWECPKCNHAGKSGKALKQKRGPGFKYASNLPGSLLKEPRKETGRDIKE
EPSPTFAMETASPTVPSVDRRKVDREDASRARGEEPQRKRATPPQPEPHPRPKLEENPLR
KKRKLFDTDAEPSARKKKKAIKSENPPSSKLLSSIKVEKEEGEDEYGRSKERDGQRGRSE
EEEDGDDEREEEEEEEEDEKSSERRKVPQSLHPRAKQEIVQSQLSSPQAGPSSSESADKI
QPRSNPRPRQQKTAKRELKQEEPLKEEPLNGQNGRRPIKSEPLESEEEEADEEDEHVGRG
KVNGESKHLSNGHRRSGSDLADWLSTEHERDSGGVAPRRPPLSPLGWRRSPPSAPRPHIS
HSPPSTSPQERHVIRPPPISPPPDSLLLANGRQHVMRREVWMAVFTHLTHQDLCVCMRVC
KTWNRWGCDKRLWTRIDLNRCKSITPLMLSGIIRRQPVSLNLSWTNISKKQLSWLINRLP
GLRALQLAGCSWAAASALCTASCPLLHSLHLQWVEGLKDAQMEDLLSPPTDTRPGQLESR
SKLRNVVDLRLAGLDITDSSLRLLTLHLPLLSRLDLSYCNHINDQSINMLTAVGTSTRDS
LTEINLSVCNQVTDQSLAYFKRCGSICHIDLRYCKQVTKEGCEQFIAEMSVSVQFSLQEE
KLLRKLT
NT seq 3984 nt   +upstreamnt  +downstreamnt
atggaagcgtgcgcagacagaggacgcaaactgcgctccatctgccggagaatgtatgac
gagaatgaggatttctccgatgtggaggaaattgcgaatgtcagaggtttcagcttggaa
gaaaaacttgagagcaagtcgtacaattccaactttgtacaacgcatggatggaaaagat
tttacctatgaatatgttcaacgagaagcactcagaacacccttaatttttgaagtcaaa
gatggactaggcatcagaatgcctgatccagactttactgtcagtgaaattaaagctttg
gtcggcagtcggcgtgctctggatgtgatggacgtgagcactcagaaggggaccgagatg
agcatggctcagtttgtgcgctactatgagatgccagaggaggagcgagacaaactcttc
aacgtcattagcctggagttcagccacaccaagctggagaaccttatcaaacgacccaca
gtggttgatctcgtggactgggtagatagcatgtggcctcctcacctgaagaaacagcag
atggagtctacgaacatcatcactgagatgaaataccccaaagtccagaagtactgctta
atgagtgtgaagggctgtttcaccgacttccacatcgacttcggagggacgtcagtgtgg
taccacgtcttcaaaggaggcaagatcttctggctggtaccccccacccctcataacctg
gccgtgtatgaggactgggtgctgtcgggcaaacagagtgacttcttcttaggcgaccgt
gccgacggctgccagagggtggagctaaagcagggctacaccttttttatcccctcaggc
tggatccacgctgtctacacccctgaggacacattggtatttggtgggaacattctccac
agctttaacattcctatgcagctcagcatccatgagattgagaataggaccaaggtccgc
tccaagttccgctatccattcttctatgagatgtgctggtatgttctagagcgctacgtc
cactgcctcactcgacgcacccacctcagcccgcacttccgcctagacactacagtagcg
gctacgctaacagagacggagtccaagcagagcacagagagccctgccactgaccccagg
ctggacgtcctggatgaggactcgggtgatacccagggcaggagcgcctgtctagccagt
gacaacccctgctccccacaggacgcccagatgcccacctctgcaatgcccctcagcaat
gccaccacacccccccagaagcaagcccctgccaatgactccgatgatggttccacccac
ccatcagagatccccagaaccccctgtggatctccaaggtcagaggtcggctcccggtgg
acccacctgacggagtttgagctgcagggcctgcaggcgctggtggagaagctggaggca
ctacccgacaacaagcgttgcgtgccggactgcatcaaggacccacacaccctgctcgag
cacattaaggttgtgttgaaggagcatgcaacagatgaccccaagatggccatctctggt
gttccagttgtgagctggccaaagactacagttaagcgcccagccaaccgctccaaaccc
aagacggcctctccctcgggtgtgggcgtggtcaagctgtcaggagggcgtggctcgtcc
gggtcacggcggcgacggacgcgatgcaggaagtgtgaggcgtgtgtgaggacagagtgt
ggagagtgtcacttctgcaaggacatgaagaagtttggggggccgggacgcatgaagcag
tcctgcatcatgagacagtgcatcgcgccggttctccctcacactgcggtgtgtggtgtg
tgtggggaggcggggaaggaggactcggcggagcaggtggaggagaagttcaacctcaca
ctcatggagtgctccatctgcaacgagatcgtacacccgctctgtctcaaggtgaaggat
gcgagtggcgttgtcaacgatgagctgcccaactgctgggagtgtcctaaatgtaaccat
gccggcaagtcagggaaagccctcaagcaaaaaagagggccgggctttaagtatgcctcc
aacctgccggggtctctcctgaaggagccacgcaaggagacgggccgagacatcaaggag
gagcccagccccaccttcgccatggaaaccgcttcgcccaccgtgccctcggtggacagg
aggaaggtggaccgagaggacgcctccagagcgagaggggaggagcctcaaaggaagcgt
gccacgcccccgcagcctgagccccacccccggcccaaactcgaggagaacccgctgagg
aagaagaggaaactgttcgacacggacgccgagcctagcgccaggaaaaagaaaaaggcc
ataaaatcagagaacccgccgtccagcaagctcttatcctccatcaaagtagagaaggag
gaaggggaggacgagtatgggcggtccaaggaacgtgacggccagcgaggcaggtcagag
gaagaggaggatggagatgatgagagggaggaggaggaggaggaggaggaagatgagaag
agctcagagaggaggaaggtccctcaaagccttcatcccagagctaagcaggagattgtc
caatcacagctcagctctccgcaggcagggcctagcagcagcgaatcagcagacaagatc
cagccgaggtccaatccgaggcctcggcagcagaagacagccaagcgggagctgaagcag
gaagagccgctgaaagaggagcctttgaacggccagaacggccgccggccaatcaaatca
gagcccctggagagtgaggaagaagaggcagacgaggaagatgagcatgtggggaggggg
aaggtgaatggagagagtaagcacctgagtaacggccaccggcgcagcgggagcgacctg
gccgactggctgagcacggagcacgagcgcgacagcggcggcgtcgccccccggaggccg
cccctgtcaccgctgggctggagacgcagccccccctcggccccacgaccccacatctcc
cactcgcccccctccacttcgccccaggagcgccacgtcatccgaccccctccaatcagc
cccccgcccgactccctgctgctggccaacggccgccagcacgtgatgcgccgggaggtg
tggatggccgtgttcacacacctcacacatcaggacctgtgtgtgtgtatgcgtgtctgc
aagacctggaaccgatggggttgtgataagcgcctgtggacacggatcgatctgaaccgc
tgcaagtccatcaccccactgatgctgagcgggattatccgcaggcagcccgtctctctg
aacctcagctggaccaacatctccaagaagcagctcagctggctcatcaacaggctgcct
ggcctgcgtgcactgcagttagcgggctgttcgtgggctgctgcatcggccctttgcacg
gccagctgtcctcttctgcactcactccacctgcaatgggtcgagggcctcaaggatgcc
cagatggaggacctgctgtccccccccaccgacaccagaccaggtcagctggagagccgc
agtaagctgcgtaacgttgtggacctgcgtctggctggtctggacatcacggactcgtct
ctgcgcctgctcaccctccacttgccgctgctctctcgcctcgacctcagctactgcaac
cacatcaatgaccagtccatcaacatgctgaccgccgtgggcaccagcacacgggactcg
ctcaccgagatcaatctgtcagtgtgtaaccaggtcacagaccaatccctggcctacttc
aagcgttgcgggagcatctgccacatagacctgcgctactgcaagcaggtgaccaaggag
ggctgtgagcagttcatcgccgagatgtctgtgagcgtgcagtttagccttcaggaggag
aaattactgcgcaagctcacctag

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