Clupea harengus (Atlantic herring): 105908476
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Entry
105908476 CDS
T09045
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
105908476 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105908476 (kdm2aa)
04121 Ubiquitin system [BR:
char04121
]
105908476 (kdm2aa)
03036 Chromosome and associated proteins [BR:
char03036
]
105908476 (kdm2aa)
Enzymes [BR:
char01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
105908476 (kdm2aa)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
105908476 (kdm2aa)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
105908476 (kdm2aa)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
105908476 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
105908476 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
DUF7885
F-box-like
JmjC
Cupin_8
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
105908476
NCBI-ProteinID:
XP_031415206
Ensembl:
ENSCHAG00000025485
UniProt:
A0A6P8ESB7
LinkDB
All DBs
Position
22:complement(7754302..7774527)
Genome browser
AA seq
1382 aa
AA seq
DB search
MLRPEDRGSWRKDVKWKSTEERKKSRAKRRDGEVTLKRSGTRRRYHDDGISDDEIEGKRT
FDLEEKLRSDRFSSDRVRRLEGKDFNFEYIQREGLRDPIIFERPEGLGIKMPDSDFSVND
VKSYVGSRRVVDVMDVTTQKNIEMSMAHWRRYYETPPAQREKLYNVISLEFSHTKLENLV
KRPATVDIIDWVDNMWPRHLKERQRDSTNAIIDMQYPKVQKYCLMSVQGCYTDFHIDFGG
TSVWYHILRGGKVFWLIPPTPQNLDLYENWVLSGKQGDIFLGDKATDCQRIELKQGYTFI
IPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVL
ERYLYSLTNTSYLTPDFQKHSLGIGLKREASSEDGENLNGHNKEEDDEDDEKPPSPLIKP
GVKVHLTPFELEGMWSLLGKLESLPSHKNCVPAGIQNAPALLHDIKALLKEHAADIPKLS
YTGKPIVKWPRRPSWYSPPPTPAPVGRPRLATTVVAPRPVKPPSSMSVLRRRRVRCKRCE
ACLRTECGECNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSAACEVCGEGNPEPGESQT
FSLMLMECSNCAQIAHPGCLKVAGEGVVNKDLPSCWECPKCVQDKGNNSESSGSGDDGPA
SGCLLLLPAAQRLFAPEGAALGRQGQGAGAVWRRVGRPPSSSSSPLPLAQGSPRQRAGTL
EQQRRLRKRIKLERKKIHMKRKSSSLDGRPAKMYRRHGHDQDEDDSVSDDDEDDEGMRPG
PRKMSLHARGGTSASRRGYGAGRRGIWRGTSHRGRGRGSGLAPNSGLKMRRGFGVRGERG
GRVRLRGGSRMQRRRYESDDDDDDDDDDDDDDDDDDDDEDDESDEEHMSHAEKDHRRRRR
RRRRRDDDDDDDDEDDDDDEDSEDLDGEDEEMDDMDEEDDDDDDDEEEDDNQTDSDPEPP
VLLVSDLNDELLNGSYLTVTLQRPTKAKRDPGSIVPKLEAAMSPRAPSGSSPGPGFIQRK
TLHKARHKNGSTVATGNGLTQPKGSALATPGRHPRHRNSNHRHHHHRDGERDTASPSSSA
SSRSSVSPTPPPPSSSTSPPSLLSHPSFREVGNEPGAEKEVWVSVFRYLTRTELSVCMTV
CKAWYKWGCDKRLWTRIDLSRCRSLTSQALSGIIKRQPVTLDLSWTPISKKQLSWLIHRM
PGLKDLLVAGCPWLSVSALSSSSCPYLRTLDLRWAEGVRDSQIKDLVTPQGVESRSRLRA
MQTLRLSGLDIGDSTLRLLLRHMPLLRRLDLAHCRAITDQSVILLTATGSPTRHALTELN
LAGCHKLTDACLQYLKRASALQLLDLRGCKGVTRRACESFISDLSYCTYFCMTDDKLIQR
IS
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgctgcggccggaggacagaggaagctggaggaaggatgtgaagtggaagagcacagag
gagcgaaagaagagtcgagcaaaaagaagggatggagaagtgacactgaagcggtcaggc
acgcggcggcgttaccatgacgatggcatctccgatgacgagatcgaggggaagagaacc
tttgacctggaggagaagctgcggagcgatcgcttcagctccgatcgggtcagacggctg
gaggggaaagatttcaacttcgagtacatccagagggaaggactgcgggaccctatcatc
tttgagaggccagaaggactgggcatcaagatgccagactctgacttcagtgtgaacgat
gtgaaaagttatgtaggcagtcggcgagtggttgacgtgatggatgtgaccactcagaag
aacattgagatgtctatggcacactggaggcggtactatgagaccccacctgcccagaga
gaaaagctgtacaacgtcatcagcctggagttcagccacaccaaactagagaacctggtc
aaaaggcctgcgacggtggacatcattgattgggtggacaacatgtggccccggcacctg
aaggagcgacaaagagactccaccaatgctatcatagacatgcagtaccccaaagtgcag
aaatattgtttgatgagtgtgcagggctgctacacagacttccacattgacttcgggggc
acgtctgtctggtaccacatattacgaggaggaaaggtcttctggctgatcccacccaca
ccacagaacctggatctctatgagaactgggtgctgtcgggcaaacagggtgacatcttc
ctgggtgacaaggccaccgactgccagaggatagaacttaagcagggatacacattcata
ataccatcaggctggatccatgcagtctacacacctgtagacacgttggtctttggtggg
aacttcctgcacagttttaacatccccatgcagctcaacatctacagcattgaggaccgc
acacgggttcctgccaaatttcgctacccgttctactacgagatgtgttggtatgtcctg
gagaggtacctgtatagcctgaccaacacctcatacctgacgcccgactttcagaaacac
tccctgggcatcggcctgaagcgagaggcctctagcgaagacggtgaaaaccttaacggc
cacaacaaagaggaagatgacgaagatgatgagaagcccccctctcccctcatcaaacct
ggggttaaagttcacctgactccctttgagctggaggggatgtggagcctgctggggaag
ctggagtctctgccttcccacaagaactgtgtgcctgctggcatccaaaacgcacctgcc
ctgctgcatgacatcaaggcactgctaaaggaacatgctgctgacatccccaagctatcc
tacactggaaaacctattgtgaagtggccaaggagaccctcgtggtattcacctcctcct
accccagcccctgtagggcgccctcgtctggccactacggttgtggcgccacggccggtg
aagccgccctcgtccatgtcggtgctgcggcggcgacgcgtacgctgcaagcgctgtgag
gcctgtctgcgcactgaatgtggcgagtgcaacttctgccgagacatgaagaagttcggt
ggccccggcaagctcaagcagacctgcgtgcttcgccagtgcctggcgccgggcctgccc
ctgtcagcagcgtgtgaggtgtgtggggagggcaaccctgagcctggcgagtcccagacc
ttctccctcatgctcatggagtgctccaactgtgcccagatagcgcaccccggctgcctc
aaggtggcaggagaaggagtagttaataaagacctgcccagttgctgggaatgccccaag
tgcgttcaggacaagggcaacaactctgagtcatcgggcagcggtgatgacggcccggcg
agcgggtgcctgctccttctgcctgcggcccagcgcctcttcgcgcccgagggggccgcg
ttgggccggcagggtcagggggccggggccgtgtggcgaagggtgggccgccccccttcc
tcctcctcctctcccctccctctcgcccaggggtcgccacggcaacgggcgggcaccctg
gagcagcagcggcggctcaggaagaggatcaaattggagcggaagaaaatccacatgaaa
cggaagtcctcctctctggatggtcgtcctgctaagatgtaccgccggcatggccacgac
caagatgaagatgactcggtcagtgacgacgatgaggatgatgagggcatgcgaccaggg
ccaaggaagatgtcactccacgcccggggtgggacttcggctagtcgccgtggttatggt
gctgggaggcggggcatatggagaggcacctctcaccgggggaggggtcgaggcagcggg
ttggcccccaactctgggttgaagatgaggcggggttttggggttcgaggcgagagaggc
ggccgggttagactccggggtggatccaggatgcagcggcgacgctacgagtcagatgac
gacgatgacgatgatgatgacgatgatgacgacgacgacgatgacgacgatgacgaagat
gatgagagcgacgaggagcacatgagccacgcagagaaagaccatcgacggcggcggcgg
agacgcagaaggagagatgatgatgacgacgacgacgatgaggacgacgacgacgatgag
gacagcgaggacctggacggagaggacgaggagatggacgacatggacgaagaggacgac
gacgacgacgatgacgaagaggaggacgacaaccagaccgactctgatcccgagccacct
gtgctgctggtttcggacctgaacgacgagttgctgaatggctcctacctgacggtcacc
ctgcagcgccccaccaaggccaagcgtgaccccggctccatcgtgcccaagctagaggcc
gccatgtccccccgagcgcccagtggcagcagccccggccctggcttcatccagcgcaag
accctgcacaaggcacgccacaagaatggcagcactgttgccaccggcaacggcctcacg
caaccaaagggttctgctttggcaacgccgggcagacacccacggcatcgcaactccaac
catcggcaccatcaccacagagacggcgagagggacacggcctcaccttccagctcggcg
tcgtctcgctcctcagtttcgcccacaccacctccaccctcatcttccacctctcctccg
tcgctcctctcccatccctccttccgggaggtggggaacgagccgggcgctgagaaggag
gtgtgggtctctgtgttccgatacctgacacgcactgagctcagcgtctgcatgactgtc
tgcaaggcctggtacaagtggggctgtgacaaacgtctctggactcggatagatcttagc
cgctgtcgctctctgacctctcaagccctgtcaggcatcatcaagcgccagccagtgacc
cttgacctctcctggacacccatctccaagaagcagctctcctggctcatccaccgaatg
ccaggtctgaaggatctgctggtggccggctgcccctggctgtctgtgtcggcactcagc
tcctccagctgtccgtacctgcgcaccctggacctgcgctgggccgagggggtgagagac
agccagatcaaagacctggtcacaccccaaggcgttgagtcgcgcagccgactgcgggcc
atgcagacgctacgcctgtcgggtctggacatcggtgactcgacgctgcggctgctgctc
agacacatgcccctgctgcggcggctagacctggcccactgccgggccatcacagaccag
tccgtgatcctcctaactgccaccggctcccccacacgccacgcgctcaccgagcttaac
cttgcaggctgtcataagctgacggacgcatgcctgcagtacctgaagcgcgcgtctgcg
ctgcagctgctggacctgcggggctgtaagggcgtgacgcgccgcgcctgcgagagcttc
atctccgacctctcctactgcacctacttctgcatgaccgatgacaagctcatccagagg
atatcctaa
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integrated database retrieval system
