Clupea harengus (Atlantic herring): 105909063
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Entry
105909063 CDS
T09045
Symbol
ext1c
Name
(RefSeq) exostosin-1c
KO
K02366
glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:
2.4.1.224
2.4.1.225
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
char01100
Metabolic pathways
Module
char_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
105909063 (ext1c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
char01003
]
105909063 (ext1c)
Enzymes [BR:
char01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
105909063 (ext1c)
2.4.1.225 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase
105909063 (ext1c)
Glycosyltransferases [BR:
char01003
]
Glycan extension
O-Glycan
105909063 (ext1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin_GT47
RXYLT1_C
Motif
Other DBs
NCBI-GeneID:
105909063
NCBI-ProteinID:
XP_012693106
Ensembl:
ENSCHAG00000002052
UniProt:
A0A6P3W9L1
LinkDB
All DBs
Position
19:11402466..11453186
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AA seq
739 aa
AA seq
DB search
MQARKKYVLLALCACCWLLLFYWGGVQSRLLRLLSHQRGEDPPRPWPEWVDRALLPGYAG
LEELQTPAGPGDSPRQRRQTWASIYRDSRCRMDTCFDFTRCQNARDGFRVYVYPPERGER
VSESYRKILASVTESRYYTADPREACLFVLGIDTLDRDQLSSQFVPNVDERIRGYPLWND
GRNHLVFNLYSGTWPNYTEDLGFRVGQAILAKASLNSEHFRPGFDVSIPLFSRDHPQKGG
ERGWLLRNSVPPRRKYLLMFKGKRYLTGIGSDTRNALHHIHNGKDIVSLTTCRHGKDWEK
HKDARCDHDNQEYERFDYQELLHNSTFCLVPRGRRLGSFRFLESLQAACIPVLLSNGWEL
PFSEVIQWNQAVIEGDERLLLQVPSTVRAVVIERVLAMRQRTQMLWEAYFSTVDKIVLTT
LEIIKDRVFSHISRNKLMWNSLPGGLLVLPEYSTHLAHYPFYYLNLGLSPGQEFTAVIHA
TSPLVSQSQPIMKLLQVVSRSKYCSQIIIIWNSEKPPPHRSKWPPMPVPLIVTDGRKKTT
SRFLPQAAIETEAVLSLDEDTVLLTSEVNFAFHVWRSFPERIVGYPPRSHFWDPVKQIWG
YTSKWTNEYSIVLTGAAFYHRYYNHLFSHYLPHSLRALVDRTSNCEDILMNFLVSSVTHL
PPIKVAQRKQYKELPSPQGTKMAPWANPEHFTQRQECVNTFASWFGYMPLVHSQFRLDPV
LFKDHVSVLRKKYKDLERA
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgcgaaagaagtatgtgctgctggccctgtgtgcatgctgctggctgctgctc
ttctactggggcggggtgcagtcacgcctgctgcgcctgctgagccaccagcggggcgag
gacccccccaggccctggcctgagtgggtggaccgggccctgctgccgggctacgcgggc
ctggaggagctccagacgcccgccggacccggggactctccccggcagcgccggcagacc
tgggccagcatctaccgggacagccgctgccgcatggacacctgtttcgacttcacgcgc
tgccagaacgcgcgagacggcttccgcgtgtacgtgtacccgcccgagcgcggcgagcgt
gtgtccgagagctaccgcaagatcctggcgtcggtgaccgagtcgcgctactacacggcg
gacccgcgcgaggcatgtctgttcgtgctgggcatcgacacgctggaccgcgaccagctc
tcctcgcagttcgtgcccaacgtggacgagcgcatccgcggctacccgctgtggaacgac
gggcgcaaccacctggtcttcaacctgtactcgggcacgtggcccaactacacggaggac
ctgggcttccgcgtgggccaggccattctagccaaggctagcctgaactcagaacacttc
cggccaggcttcgatgtctctatcccgctcttctcgcgagaccacccgcagaagggcggc
gagcgcggatggctgctcaggaactcggtgccgccgcgcaggaagtacctgctcatgttc
aagggcaagcgctacctcacgggcatcggctcggacacccgcaacgcgctccaccacatc
cacaacggcaaggacatcgtctcactcaccacctgtcgccacggcaaggactgggagaag
cacaaagacgctcgctgcgaccatgacaaccaagagtatgagaggtttgactaccaggag
ctgctccacaactccacgttctgtctggttcctcgaggccggcggctgggatcatttcgc
ttcctggagtctctgcaggctgcgtgtattccagtgctgctcagtaatggatgggaactg
cccttctccgaggtcatccagtggaatcaggcggtcattgagggagatgagaggctgttg
ctacaggtgccctccacggtgcgggcggtggtcattgagcgggtcctggccatgaggcag
cgcacacagatgctgtgggaggcctacttctccaccgttgacaaaattgtgcttaccacc
ctggagatcatcaaggaccgcgtgttctcccacatctccaggaataagttaatgtggaac
tctttgcctggaggcctgctggttctgccggagtactcgacccacctggcccactacccc
ttctactacctgaacctagggctcagtcctggtcaggagttcaccgctgtcatccacgcc
acctccccgctggtctctcagtcccagcccatcatgaagctgctgcaggtggtgtccaga
tccaaatactgctctcagataatcattatatggaacagtgagaagccgcctccacatcga
agcaaatggcctcccatgcctgtgcccctcatcgtcacagacggcagaaagaagacgact
agccgcttcctgccacaggctgccatagagacagaggcggtgcttagtctggatgaggat
acggtgctgctcacgagcgaggttaacttcgctttccatgtctggcgcagtttcccagag
aggattgtgggataccctcccaggagccacttctgggatccggtgaagcagatttggggc
tacacctccaaatggaccaatgagtactccatcgtcctgacgggagctgccttctatcac
aggtattacaatcacctgttctcccattacctgcctcactcgcttcgagcgctcgtcgac
cgcacctccaactgcgaggacatcctcatgaacttcctggtctcatctgtcactcacctt
ccgcccattaaagtggcccagaggaagcagtacaaagagctgccaagtccgcaggggacg
aagatggccccgtgggcaaacccagagcactttacccagagacaggagtgcgtgaacacg
ttcgccagctggttcggctacatgcctctggtgcactcgcagttccgcctggaccccgtg
cttttcaaggaccacgtgtccgtcctgcgcaagaagtacaaagacctggaacgtgcctga
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