Clupea harengus (Atlantic herring): 105909509
Help
Entry
105909509 CDS
T09045
Name
(RefSeq) pleckstrin homology domain-containing family M member 1
KO
K23282
pleckstrin homology domain-containing family M member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04140
Autophagy - animal
char05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105909509
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
105909509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105909509
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105909509
Membrane trafficking [BR:
char04131
]
SNARE
SNARE associated proteins
Others
105909509
Domain-containing proteins not elsewhere classified [BR:
char04990
]
Pleckstrin homology (PH) domain-containing proteins
Other PH domain-containing proteins
105909509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RH_dom
RUN
PH
PH_9
Motif
Other DBs
NCBI-GeneID:
105909509
NCBI-ProteinID:
XP_031417560
UniProt:
A0A6P8F0H7
LinkDB
All DBs
Position
23:20329589..20349850
Genome browser
AA seq
1250 aa
AA seq
DB search
MLATQTPEIGSDTKDVKQWIKEKIAQTIKALQKRYVATDTAVTSEDAEVNLLCCALEAVF
IHGIKSKYIRSEVRGRGRKGGGRDSVLPQPDFWGLLKSVTHRDVILELERLSFISSGVGR
CRAWVRLALNDGLLECYLASLLREDSKLSGYYQQGALLLDPEDREVLLSLLQGLASLSFQ
LSYKSAVLNEWTVTPLALAGLCPSPPPPADLAAAAGRCPPHVASNGKRKESWDTASQSSS
GGSDAGVVGRGGGGGVGMEGGAETRSSNQSLDTAGSSQLSSSLSSDSLLQGTERDSWDIS
HADVRRAYREASTTSSQDSMREDSYISSLTGDQLSESTAFSSLDNDTHTPATDTHTPATD
THTPAADTHTPASDTHLPSPLRTHTPGPDSHLTYTRNTNRTSPTTSDVPTQIHITPVSHA
SAEDTHSTPPPIRDTRQSPIAGRDAPLTSTPADDARCKDTHLGPTSAVDAQLAHMQTIID
TLVTHTQPGDTHTHLQVERSTLTDTTVEVLRQNKRARSPMRRNRSPDGTSTSPTPEESSI
TSATTSDTATATTSDPEENAEEPSQLIHASPCPAEPVVFPRRSGSTISRQRSSDFHNPTS
WISEEDFYKPATEESSSLTDQPGFGVALLNGSLSPPPEPEVPQSAPRVVHRRQIGLSNPF
RGLLKLGTLERRGAVGMWWEHHCELSPFELRLYLDPEDRAACDNSSLLRCEVARLHGDDG
RFVLAFAAGKRLHLRAGSRGEAEDWVERIQEAVAKIRPATKRGPDDEWEVIRAPKATESE
TSTSPSSPSTPTSAPTSPAHAPVAPPLPPQLLPLDWTRPTDPEPDAIKEAVVYQLASTST
RGPLLSPCPPPEDPSLGWTPLLLSLSLEALRGYRWQTTAGGGGDDDEDGGGGDHGHKAPL
FRHAIQTVRDVVPDAARGGPEYFRVVTSDGVTLTLRAENAKEARAWRDLIRGALDSYLDT
EEEGLPEGAGPVAGGGGGAMAGWAVSVQGSIQRLVQHRLKGEAAALLPHLCTVPTERGLD
AQSFKCTGCSKQIGFSAGRARLCEFSAQYYCESCHRGDAIVIPSRLVHNWDLTPREVSRQ
VLKLLAQIENEPLLNLDLLNPDLYNHTETMAIVRTLRQKLRLLGDYVLLCRSGINKKLQA
RLNQRSYLLESDQLYSVTDLWQAADGQYEAFLLSLIQFSASHVHSCDLCTQRGFICQICN
ADDIIFPFQFETTSRCKGCKSVFHSSCREDSPTCPRCVRLQRYLERDLQD
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctacccaaacaccagaaattggctcggacaccaaagacgtgaaacagtggatc
aaagagaagatcgcccagaccatcaaagccctacagaagcgctacgtggcgacggacaca
gcggtaaccagcgaggatgcggaggtcaacctgctgtgttgcgccctggaggctgtcttc
atccatggcatcaagagcaagtacatcagatcagaggtcagaggtcgcgggcggaaaggg
ggcggcagggacagtgtcctcccccagccggacttctgggggcttctcaagtctgtcact
cacagagacgtgattctggagctggagcgcctgagcttcatcagttctggggtgggccgc
tgccgggcctgggttcgtctggcgcttaacgacgggctgctggagtgctacctggcctct
ctgctgagggaggactccaagctctctgggtactaccagcagggggcgctgctgctggac
ccagaggaccgtgaggtgctgctgagcctgctgcagggcctggcctccctctccttccag
ctgtcctacaagtccgccgtgctcaacgagtggaccgtgaccccgctggccctcgccggc
ctctgcccgtctccgccgccgcccgccgacctcgccgcggcagccgggcgctgcccgccc
cacgtggccagcaacggcaagcgcaaggaatcctgggacacggcctcgcagtcgtcgtcc
gggggttccgacgcgggggtggtgggtcgtggcggcggcggcggggtggggatggagggg
ggtgcggagacgaggtcgtccaatcagagcctggacacggcgggctcgtcacagctgtcc
tccagtctgagctccgacagcctgctgcaggggacggagagggactcgtgggacatcagc
catgcagacgtcaggagagcatacagagaagcgagcacaacctccagtcaggactccatg
agggaggactcctacatctccagcctcaccggtgaccagctgtctgagagcacagcattc
agcagcttagacaacgacacacacacgcccgctaccgacacacacacgcccgctaccgac
acacacacgcccgctgccgacacacacacgcccgcttccgacacacacctcccatcacct
cttcgcacacacacaccgggccccgactcccacctcacatacactcgcaacacgaatcgt
acgtcgcccacgaccagtgatgttcccacacaaatccacatcacgcctgtctcacacgcc
tcagctgaggacacacactccacaccccccccgatcagagacacacgccagtcccccatc
gctggcagagatgcccctctcacttcgaccccggcagatgacgcccgttgcaaagacaca
cacctagggccgacttcggcagtcgatgcacagctcgcacacatgcagaccattattgac
accctcgtcacacacacacaacccggcgacacacacacacacctgcaggtggagcggagc
actttaacggacacgaccgtggaggttctgaggcagaacaagcgggcgaggagcccgatg
agacggaaccgttctcctgacggaacgtcaacgagtcccaccccagaggaatcttccatt
acctcggcgacgacatctgacaccgccacggcgacgacctctgaccctgaggagaacgca
gaggagcctagtcagctgatccatgcgtcaccatgccccgctgagccggtggtgtttcca
cggcgatctggaagcaccataagcagacagagatcatcagacttccataaccccacttcg
tggatctccgaggaggacttctacaaacccgccacggaagagtccagtagcctgacggat
cagcccggtttcggggtggctctgctgaacgggtcgctgtctccgccaccagaaccagag
gtcccccagtctgcccccagggtggtccaccgcagacagataggtctgtctaacccgttc
cgtgggctgctgaagctgggtaccctggagcggcgcggggcggtgggcatgtggtgggag
caccactgtgagctgtcccccttcgagctgcgcctctacctggaccccgaggaccgcgcc
gcctgcgacaactcctccctgctgcgctgcgaggtggcgcgtctccacggcgacgacggc
cgcttcgtgctggccttcgccgccggcaagcggctccacctgcgggcggggtcgcgcggc
gaggccgaggactgggtggagcgcatccaggaggccgtggccaagatccgcccggcgacc
aagcgaggccccgacgacgagtgggaggttatccgcgccccgaaggccaccgagagcgag
acgtccacgtcgccgtcgtccccctcgacgcccacctccgccccaaccagccccgcccac
gccccagtggccccacccctgccccctcagctcctccctctggactggacccggccaacc
gaccccgaacctgacgccatcaaagaggcggtggtctaccagctggcctccacgtccacc
cgggggcccttgctctccccctgcccgccgccagaggacccttccctgggctggacgccg
ctgctgctctccctgtccctggaggcgctgcggggctaccgctggcaaacgacagcgggc
ggcggcggcgacgacgacgaagacggcggcggtggcgaccacggccacaaagcacccctc
ttccgccacgccattcagacggtgcgcgacgtggtgcccgacgccgcccgcggcgggccc
gagtacttccgggtcgtgacctcggacggcgtgacgctcacgttgcgggcggagaacgcg
aaggaggcgcgggcgtggcgggacctcatccgcggagcgctggactcctacctggacacg
gaggaggaggggttgccggagggggcagggcctgtggccgggggaggaggcggggctatg
gcaggatgggcggtgtcagtgcagggaagtattcagcgattggtccagcaccggctgaag
ggggaggcggcggcgctgctaccacacctgtgcaccgtgcccacagagagaggactggac
gcccagagcttcaaatgcacaggctgtagtaagcagataggtttctccgcgggcagagcc
agactctgtgagttctcggctcaatactactgtgagtcctgtcaccgcggcgatgccatt
gtcatcccctctcgtctggtacacaactgggatctgacaccacgagaggtctccaggcag
gtccttaagctgcttgctcagattgagaatgagcccttgctgaacctcgacctcctgaac
cctgacctttacaaccacaccgaaaccatggcgatcgtgcggacgctccgccaaaagctc
cgtctccttggcgactatgtgctcctgtgccgcagtggaatcaacaagaagctgcaggcc
aggctaaaccagaggagctacctgttggagtctgaccagctctacagcgtcacggactta
tggcaggctgcggatggtcagtacgaggccttcctgctctcgctgatccagttctcggcc
agtcacgtgcacagctgtgacctttgcacccagagaggcttcatctgccagatctgcaat
gccgatgacatcatcttcccctttcagtttgagaccacaagcaggtgtaagggttgtaag
tcggtgttccactcctcctgtagagaagacagtcccacgtgtcctcgctgtgtccggctg
cagaggtacctggaacgagacctgcaggattga
DBGET
integrated database retrieval system
