Clupea harengus (Atlantic herring): 105909573
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Entry
105909573 CDS
T09045
Symbol
otofa
Name
(RefSeq) otoferlin isoform X3
KO
K19949
otoferlin
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105909573 (otofa)
Membrane trafficking [BR:
char04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
105909573 (otofa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
Ferlin_C
FerB
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
105909573
NCBI-ProteinID:
XP_031437276
Ensembl:
ENSCHAG00000023495
UniProt:
A0A6P8GIP9
LinkDB
All DBs
Position
15:complement(14232841..14356243)
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AA seq
2073 aa
AA seq
DB search
MALVVRLNTITCLRGKADRIAKVTFRGLPFYSRVVENCEEEARFDEMFRWPIGSKVDGNE
ILEIQVFNYSKMFTNRLIGTFRMVLQKVVEEGHLQVSDTLIDDNNTAIQTTISIEIRYQT
MDMSVTVWSDGEFLDVPDDSDGIFQFETDSLLSGNSQSSGVSPGRRSLQNSIPTFRNTRR
DKSKKDPKEDQARKKKAGKGVFSAMKLGKTRISKDDHKRADDAAILETEDLDRKAMRLGG
VIDPDTISLASVTAVTTNVSNKRSKPDIKMEPSSGRPVDYQISVTVIEARQLVGLNMDPV
VCVEIGDDKKYTSMKESTNCPYYNEYFVFDFHVSPDVMFDKILKISVIHSKNLLRSGTLV
GTFKMDVGTVYSQPEHQFYHKWAMLSDPEDLTTGCKGYVKCDVAVVGKGDNIKTPHKASE
TDEDDIEGNLLLPEGVPSERQWARFYVKIYRAEGLPKMNTSIMANVKKAFIGENRDLVDP
YVQVQFSGQKGKTSVQKSSYEPTWNEQIIFTEMFPPLCKRIKVQIRDSDKVNDVAIGTHF
IDLRKIANDGDKGFLPTMGPAWVNMYGSTRNYTLMDEHQDLNEGLGEGVSFRARLLIGVA
VEILDTTSPEIMSSTEVQTDPVSNISESATGKVDEFFLFGSFLEATMIDRKIGDKPISFE
VTIGNYGNQIDGVSKPAAAGKRKRREGGAESDEEELELIQHSSDEETDDSADLVSVSCTP
VMKPVITDRNYFHLPYFEKKPCIYIKSWWQDQRRRLYNSNIMDKIADKLEEGLNDVQEII
KTEKAYPERRLRGVLEELSTGCSRYITLANKDQSQAGRTKLDRERLKSCMREMESMSQQA
KSIRSQVKRNTVRDKLKMVLNFLQRLRFLAEEPQHSIPDIFVWMMSNNKRVAYARVPSKD
ILYSIVDEETGKDCAKVKTLFLRLPGKKGFGPAGWTVQAKLEMYLWLGLNKQRKDFLSGL
PSGFEENKAAKDTGLQSVPPISLVYSMKQVFQLRAHMYQARSLFAADTSGLSDPFARVFF
STYSQVTEVLNETLCPTWDQLLVFDNVELYGEVSELRDDPPIIVIEIYDQDTVGKADFIG
RTFAKPLTKMIDEHYGPPRFPPQLEYYQIYRGNCTAGELLAAFELLQVPYDDEEIRRALI
AVHSFAVPQIKVGPAGKGSLPAIDGPTDSDRGPILPVPLGIRPILSRYRIEVLFWGLRDL
KRVNLAQVDRPRVDIECAGKGVQSSLIQNYKKNPNFSTLVKWFEVDLPENELLHPPLNIR
VVDCRAFGRYTLVGSHAVTSLRKFLYAPVDKNNARSWGHTASLLNGYMALTNGASRSCSH
SRTPSRPPGDIMVNMDPELNVKKMDTVVRLDATSDAVVKIDVNEDEKDKDGKKKKKKKKK
GEEPEEEELDESMLDWWSKYFASIETLMEALRAQEAAQAEADEREDLEIAAEGAELKADD
SPVKGTKPKDKARDKAKSSKDKKKSQAGEGQDRRPTKPRVDELLAYSKELEGEFNNFEDW
LHTFSLYRGKAGDDDEHHLADDDRIVGRFKGSVCLYKLPLSEEFSREAGFDPNMGMFQNI
PHNDPINVLVRVYVVRATDLHPADINGKADPYVVIKLGKTELKDKENYISKQLNPVFGKS
FDIEATFPMESMLTVSVYDWDLVGTDDLIGETKIDLENRYYSKHRATCGIPAYYSVHGYN
IWRDPQKPTQILAKLCKDGKLDGPHYGPGGRVKVANRIFSGATEIEDENGLKKQTEEHLA
LTVLKQWEEMPKVGCKLIPEHVETRPLLNPDKPGIEQGSLEMWVDMFPMDMTAPGPAIDI
SPRKPKSYELRVIIWNTEDVVLEDDAFMTGEKMSDIYVRGWLKGQQEDKQDTDVHYHSLT
GEGNFNWRFVYPFDYLMAEEKIVMSKKESMFSWDETEYKIPARLTMQVWDADHFSADDFL
GAIELDLNRFTRGAKTAKQCSLNMVLNEQELPTISIFKQKRVKGWWPFVARDENDELTLT
GKVEAELHLMTAEEAEKSPVGLGRNEPDPLEKPNRPDTSLMWFINPLKSIRYFIWHNYRW
LILKALGMLLLLLLLGLFLYSIPGYLVKKMLGA
NT seq
6222 nt
NT seq
+upstream
nt +downstream
nt
atggctttagtagtgcgcctcaacaccatcacctgcctgcgggggaaagcggacaggatc
gccaaagtgacgtttcgaggtctgcccttctactctcgtgtggtggagaactgtgaggag
gaggccagatttgatgagatgttccgatggcccatcgggagtaaggtggatggtaatgag
attctggagatccaggtgttcaactacagcaagatgttcaccaacaggctcataggaacc
ttccggatggttcttcagaaggtggtggaggagggacacctgcaggtgtctgatacactg
atcgacgacaacaacacagccatacagacaaccatttccatagagatcagataccagacg
atggacatgagtgtgactgtgtggagtgatggggagttccttgacgttccagatgattca
gacgggatattccagtttgagacggacagccttctctccgggaacagccagagttcggga
gtttcgccgggacgacggtccctccagaactccatccccacattcaggaacacacgcagg
gataagagcaaaaaagacccaaaggaggaccaagcaagaaagaagaaagcagggaaagga
gtgttctccgccatgaagcttgggaagacgcgcatctctaaagacgaccacaagcgagca
gatgatgctgcaatcctggagacagaagatctggaccgcaaggccatgcgcctgggcggt
gtcatcgaccccgacaccatctctctggcctccgttaccgcggtaaccaccaacgtctcc
aacaagaggtcaaagccagacataaagatggagcccagttctggtagaccggtggattac
cagatcagtgtcacggtgatcgaggctcgtcagctcgtggggttaaacatggaccccgtc
gtgtgtgtcgagatcggagacgacaagaagtacacgtccatgaaggaatccaccaactgc
ccctactataatgagtattttgtctttgacttccacgtgtctccagatgtgatgtttgac
aagattctaaagatctcggtgatccactccaagaacctcctgcgcagtggcacattggtg
ggaaccttcaagatggacgtgggcacagtttactcacagcctgagcaccagttttaccat
aagtgggccatgctgtctgaccctgaggacctcactactgggtgcaaaggttacgtgaag
tgtgacgtcgctgtggtggggaaaggggacaacatcaagacccctcacaaggccagtgag
actgatgaggatgacatcgaagggaacctccttctgccggagggggttccctcagagagg
cagtgggcccggttctatgtaaagatctaccgggccgagggcctgcccaagatgaacacc
agcatcatggcgaacgtgaagaaggccttcatcggggagaaccgggacctggtggacccc
tatgtccaagtgcagttctctggccagaagggaaaaacctctgttcagaagagcagctac
gagcccacttggaacgagcagatcatcttcacagagatgttccctcccctctgcaaacgc
atcaaggtccagattcgagactccgacaaggttaacgatgtcgccataggaacacacttc
attgacctgcgtaagatcgccaacgacggagacaagggcttcctgcccaccatgggccct
gcgtgggtgaacatgtacggctccacacggaactacaccctgatggacgagcaccaggac
ctcaacgagggcctgggggagggcgtgtccttcagggcgcgcctgctgattggtgttgcc
gtggagatcctggacaccacctccccggagatcatgagctccaccgaggtgcagacggat
cccgtgtccaacatctcagagagtgccacaggaaaggtggatgagttcttcctcttcggg
tccttcctggaggccaccatgattgacaggaagatcggagataagccaatcagcttcgag
gtcacaataggtaactatggtaaccagattgatggggtgagcaagccggcggcggcgggg
aagaggaagaggagggagggaggagcggagagcgacgaggaagagttggagctcatacag
cactcgagcgacgaagagacggatgacagcgctgacctggtgtctgtgtcctgcacgcct
gtcatgaagcccgtcatcaccgacagaaattacttccatctgccgtactttgagaagaag
ccgtgcatctacatcaagagctggtggcaagaccagaggcggcgcctgtacaactccaac
atcatggacaagattgcagacaaactggaggagggtctgaatgacgtccaggagatcatt
aaaacagagaaggcctaccctgagcgacgactgaggggggtgctggaggagctcagcact
ggctgcagccgttatattactctggcaaacaaggaccagagccaagcaggcaggaccaaa
ctggaccgcgaaagactgaagtcctgcatgagagagatggagagcatgagccagcaggcc
aagagcatccgctcccaggtgaagaggaacacagtaagagacaaactcaagatggtgctc
aacttcctgcagagactccgcttcctggctgaagagccccagcacagcatccctgacatc
ttcgtctggatgatgagcaacaacaagcgggtggcctacgcccgcgtcccctccaaggac
atcctttactccatcgtggacgaggagacgggcaaggactgcgctaaagtcaaaaccctc
tttctcaggctgcccggtaagaaaggctttggtcctgcgggctggacagttcaggctaag
ttggagatgtacctgtggctgggcctcaacaagcagaggaaggacttcctgagcggcctg
cccagcggctttgaggagaacaaagcagccaaggacacaggcctacagtccgtgccgccc
atcagcctagtatacagcatgaagcaggtgttccagctgagggctcatatgtatcaggcc
cgcagcctgtttgctgctgataccagcggcttgtcagacccctttgccagagtcttcttc
tctacctacagccaggtcacagaggtgctgaatgagactctctgccccacgtgggatcag
ctgctggtgtttgacaatgtggagctctacggtgaggtcagcgagctccgtgacgacccc
cccatcatcgtcatagaaatctacgaccaggacacggtgggcaaagctgatttcattggc
cggacgtttgccaagcccctgactaagatgattgacgagcactatggcccgccccgcttc
cctccccagctggagtactatcagatctacaggggcaactgcaccgccggagaactactc
gccgcctttgagctgctgcaggtcccctatgacgatgaggagatcaggagggctctcatc
gccgtgcatagctttgctgttcctcagatcaaggtgggtccagctggtaaagggagcttg
ccagcgatcgatgggccaacagactcggatcgcgggcccatcctgccggtccctctgggg
atccgacccatactcagtcggtaccggatagaggtgttgttctggggcctgagggatctg
aagcgggtcaacctggcccaggtggatcggccccgcgtggacattgagtgtgctgggaaa
ggggtccagtcctcactcatccagaactacaagaagaaccccaacttcagcaccctcgtc
aagtggtttgaagtggacctgccagagaacgagctgctccaccctcccctgaacatccgg
gtggtggactgccgagcgtttggccgctacaccctggtgggctctcacgccgtcaccagc
ctacgcaagttcctctacgctccagtagacaagaacaacgctcgcagctggggccacaca
gctagtcttctgaatggctacatggcgctgaccaacggggcatcccgctcttgctcccac
tcccgcaccccctctcgccccccaggtgacatcatggtcaacatggaccccgagctgaac
gtcaagaagatggatactgtggtcaggctagacgccacatctgatgcagtcgttaaaatt
gatgtgaatgaggatgagaaggacaaagacggcaagaagaagaagaaaaagaagaagaag
ggagaggagccggaagaggaagagttggatgagagcatgctggactggtggtccaagtac
tttgcctccatagagaccttgatggaggcgttgcgagcgcaggaggccgctcaggcggag
gcggatgagagggaggacctggagatcgctgcagagggagcagagctcaaagctgatgac
tctcctgtgaaaggcaccaagcccaaggacaaggccagagacaaggccaagagctccaag
gacaaaaagaagagccaagccggagagggccaggacagacggcccaccaaacccagagtg
gatgagctgctggcatacagtaaggagttggagggcgagttcaacaactttgaggactgg
ctccacaccttcagcctgtacaggggcaaagctggagacgatgatgagcaccacctggcg
gatgacgacaggattgtgggcagattcaaggggtcggtgtgcttgtacaagctgcccctg
tcagaggagttctccagagaggcgggcttcgaccccaacatgggcatgttccagaacatt
ccccacaacgacccaatcaacgtgctggtcagggtttacgtggtcagggccactgacctg
caccctgcggacatcaatggcaaagctgacccatacgtcgtcatcaaactgggcaagaca
gagctgaaggacaaggagaactacatctcaaaacaactcaatcccgtgtttggaaagtcc
tttgacattgaggccacatttcccatggaatccatgttgacggtgtccgtgtacgattgg
gatctggtcggcacggatgacctgatcggagagaccaagattgacctggagaaccgctac
tacagcaaacacagagccacatgcggcatcccagcctactactctgtccatggttacaac
atatggcgggaccctcagaagccgacccagatcctggccaagctgtgcaaggacggcaag
ctggacgggccacactacggtccagggggcagagtgaaggtggccaaccgcatcttctcc
ggcgcgaccgagatcgaggacgagaacggcttgaagaaacagacggaggagcacctggct
ttgacggtgctgaagcagtgggaggagatgcccaaagtgggctgcaaactcatcccggaa
cacgtggagaccagaccactgctcaacccagacaaacctggcattgaacagggtagtctt
gagatgtgggttgacatgtttccgatggacatgactgcaccaggacctgccattgacata
tcaccacggaaaccaaagagttatgagctgcgtgttataatttggaacactgaggacgta
gttctagaagacgatgctttcatgacaggagagaagatgtctgacatctatgtcaggggc
tggttgaagggccaacaggaggataagcaggatacagatgtccactaccactctctgacc
ggcgagggcaatttcaactggcgcttcgtctacccctttgactacctgatggccgaggag
aagatcgtcatgtccaagaaggagtccatgttctcttgggatgagaccgagtacaagatc
cccgcacggctcaccatgcaagtctgggacgcagaccatttttctgccgacgacttcctg
ggtgcgatagagctggatctgaaccggttcacgcgtggggcgaagacagccaaacagtgc
tccctgaacatggtactgaacgagcaggagctccccaccatctccatcttcaaacagaag
agagtcaagggctggtggccgttcgtagcacgagatgagaacgacgagctaacgctaacg
ggaaaagtggaggcagagcttcacctgatgactgcggaggaggcagagaagagtccagtt
gggcttggacgcaatgagccagaccctctggagaaacccaatcggccggacacgagtctc
atgtggttcataaaccccctgaagtccatccggtacttcatctggcacaattaccgctgg
ctgatcctgaaggctctggggatgctgctgctgctgctgctgctgggcctcttcctgtac
tccatccccggatacctagtcaagaagatgctgggggcctaa
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integrated database retrieval system
