Clupea harengus (Atlantic herring): 105910076
Help
Entry
105910076 CDS
T09045
Symbol
ift122
Name
(RefSeq) intraflagellar transport protein 122 homolog
KO
K19656
intraflagellar transport protein 122
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
char03037
]
105910076 (ift122)
Cilium and associated proteins [BR:
char03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
105910076 (ift122)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
Beta-prop_IFT122_2nd
Zn_ribbon_IFT122
Beta-prop_EML_2
WD40
Zn_ribbon_IFT122_C
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
EIF3I
WDR55
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WD40_MABP1-WDR62_2nd
TPR_IFT80_172
TPR_GEMI5
Beta-prop_IFT140_1st
TPR_IF140-IFT172
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WDR90_beta-prop_4th
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_WDR75_1st
TPR_7
TPR_COPA_B
Beta-prop_SPT8
TPR_12
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
105910076
NCBI-ProteinID:
XP_012694209
Ensembl:
ENSCHAG00000024796
UniProt:
A0A6P3WBE0
LinkDB
All DBs
Position
1:complement(27342473..27370425)
Genome browser
AA seq
1187 aa
AA seq
DB search
MRAVPTWIDKVHDRDKVEQCIYDIAFKPDGTQLIVAAGNRVLVYDTSDGTLIQPLKGHKD
TVYCVAYAKDGKRFASGSADKSIIIWTSKLEGILKYTHNDSIQCVAYNPVTHQLASCSSG
DFGLWSPEQKSVSKHKVSSKITCCGWTNDGQYLALGMMNGVVSIRNKNGEEKVKIERPGG
SSSPIWSIAWNPSKDEHNDILAVADWGQRLSFYQLSGKQIGKDRLLNYDPCCVSYFSKGE
YIVMGGSDKQASLYTKDGVRLGPISEQNSWVWTCRVKPDSNYVVVGCQDGTIAFFQLIFS
TVHGLYKDRYAFRDSMTDVIVQHLITEQKVRIKCRELVKKIAIYRNRLAIQLPEKILIYE
CYTDDSSDMHYRVKEKISRRFECNLLVVCSRHIILCQEKRLQCLSFTNVKEREWLMESLI
RYIKVIGGPPGREGLLVGLKNGSILKIFVDNPFAITLLKQNTSVRCLDMSASRSKLAVVD
EHNTCLVYDINTKELLFQEPNANSVAWNTQCEDMLCFSGNGYLNIKASNFPVHQQKLQGF
VVGYNGSKIFCLHVYSMAAVEVPQSAPMYQYLERRMFKEAYQIACLGVTDSDWRDLATEA
LEGLDFDTAKKAFIRVRDLRYLELISSIEERKKRGESNSELFLADVFAYQGKFHEAAKLY
RRSGYDNRALSMYTDLRMFEYAKDYLGSADPKDTRVLMSKQADWARSSKEPRAAAEMYLS
AGEHLKAINIIGEHGWVDMLIDLARKLDKAEREPLSRCAAFFKQLNHHGYASETYTKMGD
LKALAQLHVDARHWDEAFSLVEKHPEFRDDVYVPYAQWLAENDRFEEAQKAFHRAGRQAE
AVRVLEQLTHNAVVESRFNDASYYYWMLAMQCLDIARDKEEKKEEMLKKFHRFQLLAELY
HVYHSIHRYTEDPFSSHMPETLFNISRFLLHHLTKDVPLGISKVNTLYTLAKQSKYLGAY
KLARYSYERLQGLRIPPRLQEAMQLGSLTVRSKPFHDSEDLVPMCFRCSTNNPLLNNLGN
VCINCRQPFIYSASSYEVLPLVEFYLEEGIADEEAVSLIDLEQPRADRKSSRWHNMSSGE
SQSLKLNDSVDESEDPFTAKLSFEQGGSEFVPVVVSKSVLMSMSRRDVLIKRWPRPLRWQ
YYRSLLPDVSITMCPSCFQMFHSEEYELLVLQHNCCPYCRRPIDEPN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagagcggttccaacatggatagataaagtacacgaccgcgacaaggtcgagcaatgt
atctatgatatagccttcaaaccggatggcactcaactcattgttgctgcaggaaacagg
gtgttggtatatgacacttctgatgggaccttgatacagcctctgaaagggcacaaggac
actgtctactgtgtggcttatgctaaagatggaaagcggtttgcttcaggttctgctgac
aagagcatcatcatctggacatcaaaactggagggaattcttaaatatacacataatgac
tccattcagtgtgtggcgtacaaccctgtcactcatcagttggcctcctgttcctcagga
gattttggtctgtggtccccagagcaaaagtcggtgtccaagcacaaagtcagcagcaaa
atcacatgctgtggctggacaaatgatgggcaatacctggctctgggcatgatgaacggg
gttgtgagcatccgcaacaagaacggggaggagaaagtgaagattgagaggccaggcgga
tcttcctctcccatctggtccatagcctggaacccctcaaaggatgaacacaatgatatt
ttggcggtggctgactggggccagagactgtccttctaccaactcagtggcaagcagatt
ggaaaggaccggctgctgaactatgacccctgctgcgtcagctacttttccaagggcgag
tacatagtgatggggggctcagacaagcaggcctctctctacaccaaagatggtgtgcgt
ctgggccccatcagcgagcagaactcctgggtgtggacctgccgagtcaagccggactcc
aactatgtggtggtgggctgtcaggacggcaccattgccttctttcagctgatcttcagc
acggttcacggcctgtacaaggatcgctacgccttcagagacagcatgactgacgtcatt
gttcaacacctcatcaccgagcagaaagtgaggataaaatgtagagagctggtgaagaaa
atcgccatatacaggaaccgcctggccatccagctgccggagaagatcctcatttacgag
tgttacaccgacgactcgtcggacatgcactaccgcgttaaggagaagatcagtcgccgc
ttcgagtgcaacctgctggtggtgtgctcccgccacatcatcctctgccaggagaagagg
cttcagtgtctctccttcaccaatgtgaaagaaagagagtggttgatggagtctctgatt
cgctacatcaaagtgattggcggcccgccagggagggaggggcttctagtgggtctgaag
aatggttctattttgaagatctttgtggacaacccgtttgccatcacgctgctgaagcag
aacacgtctgtgcgctgcctggacatgagtgcctcgcgcagcaagctggccgtggtggac
gagcacaacacctgcctggtctacgacatcaacaccaaagagctgctcttccaggagccc
aatgcaaacagcgtggcctggaacacccagtgtgaggacatgctgtgtttctcggggaac
ggctacctcaacatcaaggccagtaacttccccgtgcaccagcagaagctgcagggcttt
gtggttggctacaacggctccaagatcttctgcttgcacgtctactccatggcagctgtg
gaagtaccccagtcagctcccatgtatcagtacctggagaggcggatgtttaaagaggcc
tatcagattgcctgcttgggcgtgaccgatagtgactggagagatctggccacggaggcc
ctggaaggcctcgattttgacacagctaagaaggccttcatcagagtgagggatctgcgc
tacctggagctcatcagtagcattgaggagcggaagaagagaggggagagcaacagcgag
ctgtttctggctgatgtgtttgcctaccaggggaagtttcacgaggctgccaagctttac
cggcgcagtggttacgacaacagagcgctcagcatgtacacagacctgcgcatgttcgag
tatgccaaggactacctgggctcggcggaccctaaggacacgcgtgtgctgatgagtaag
caggcggactgggcgcgcagcagcaaggagcccagagctgcagcggagatgtacctgagc
gccggagaacacctcaaggccatcaacatcatcggagagcacggctgggtggacatgttg
atagatctggctcgcaagttggataaagcagagcgagagccgctgtcccgttgcgctgcc
ttctttaagcagctcaatcaccatggttacgcctctgagacttacaccaaaatgggtgac
ctaaaggcactggcacagttacatgttgatgcccggcactgggacgaggccttctccctg
gtggagaagcacccagagttcagagatgatgtgtatgtgccatatgcccagtggctggca
gagaacgatcgctttgaagaggcccagaaagcgttccaccgggcgggcaggcaggcggag
gccgtgcgcgtgctggaacagctcacccacaacgccgtggtggagagccgcttcaacgac
gcctcctactactactggatgctggccatgcagtgtctggacatcgcaagagataaggag
gagaagaaggaggaaatgctgaaaaagttccaccgtttccagctattggctgagctctac
catgtctatcattccatccaccgttacacggaggatccattcagttctcacatgccagag
acgctcttcaatatctcacgcttcctactgcaccacctcaccaaggatgttcctctgggc
atctccaaagtgaacaccctgtatacgctggcgaagcagagtaagtatctgggagcgtat
aagctggcgcggtactcctacgagcggctgcagggcctgcgcatccccccgcgcctgcag
gaagccatgcagctgggcagcctcaccgtgcgctccaaacccttccacgacagtgaggac
ttggtccccatgtgttttcgctgctccaccaacaaccctctcctcaataaccttggcaat
gtctgtatcaactgcagacagcccttcatctactcggcatcctcctatgaggtgctgccg
ctggtggagttctacctggaagaggggatcgcagatgaggaggccgtctcattgattgac
ctggagcagccacgggcagacaggaagagctcccgctggcacaacatgagcagcggggag
tcccagtccctgaagctgaatgacagtgtggatgagtcagaggaccccttcacagccaaa
ctcagctttgagcaggggggcagtgagtttgtcccggtggtggtgagcaagagtgtgctg
atgtccatgtccagacgggacgtcttgatcaagcgctggccacgccctctcagatggcag
tactaccgctccctgctgcccgacgtcagcatcaccatgtgcccatcttgcttccagatg
ttccacagtgaggagtacgagctgctggtcctgcagcacaactgctgtccctactgccgc
cggccaatcgatgagcccaactga
DBGET
integrated database retrieval system
