KEGG   Clupea harengus (Atlantic herring): 105910076
Entry
105910076         CDS       T09045                                 
Symbol
ift122
Name
(RefSeq) intraflagellar transport protein 122 homolog
  KO
K19656  intraflagellar transport protein 122
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:char03037]
    105910076 (ift122)
Cilium and associated proteins [BR:char03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   105910076 (ift122)
SSDB
Motif
Pfam: TPR_IFT122 Beta-prop_IFT122_1st Beta-prop_IFT122_2nd Beta-prop_THOC3 Zn_ribbon_IFT122 Beta-prop_EML_2 WD40 Zn_ribbon_IFT122_C WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz EIF3I Beta-prop_WDR3_2nd WDR55 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_NUP159_NUP214 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_EML WD40_Gbeta NBCH_WD40 Beta-prop_WDR90_POC16_2nd TPR_IFT80_172 WD40_MABP1-WDR62_2nd TPR_GEMI5 Beta-prop_IFT140_1st TPR_IF140-IFT172 Beta-prop_WDR35_TULP_N Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 WDR90_beta-prop_4th eIF2A Beta-prop_RSE1_2nd WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_NWD2_C Beta-prop_WDR75_1st TPR_12 TPR_7 TPR_COPA_B Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 105910076
NCBI-ProteinID: XP_012694209
Ensembl: ENSCHAG00000024796
UniProt: A0A6P3WBE0
LinkDB
Position
1:complement(27342473..27370425)
AA seq 1187 aa
MRAVPTWIDKVHDRDKVEQCIYDIAFKPDGTQLIVAAGNRVLVYDTSDGTLIQPLKGHKD
TVYCVAYAKDGKRFASGSADKSIIIWTSKLEGILKYTHNDSIQCVAYNPVTHQLASCSSG
DFGLWSPEQKSVSKHKVSSKITCCGWTNDGQYLALGMMNGVVSIRNKNGEEKVKIERPGG
SSSPIWSIAWNPSKDEHNDILAVADWGQRLSFYQLSGKQIGKDRLLNYDPCCVSYFSKGE
YIVMGGSDKQASLYTKDGVRLGPISEQNSWVWTCRVKPDSNYVVVGCQDGTIAFFQLIFS
TVHGLYKDRYAFRDSMTDVIVQHLITEQKVRIKCRELVKKIAIYRNRLAIQLPEKILIYE
CYTDDSSDMHYRVKEKISRRFECNLLVVCSRHIILCQEKRLQCLSFTNVKEREWLMESLI
RYIKVIGGPPGREGLLVGLKNGSILKIFVDNPFAITLLKQNTSVRCLDMSASRSKLAVVD
EHNTCLVYDINTKELLFQEPNANSVAWNTQCEDMLCFSGNGYLNIKASNFPVHQQKLQGF
VVGYNGSKIFCLHVYSMAAVEVPQSAPMYQYLERRMFKEAYQIACLGVTDSDWRDLATEA
LEGLDFDTAKKAFIRVRDLRYLELISSIEERKKRGESNSELFLADVFAYQGKFHEAAKLY
RRSGYDNRALSMYTDLRMFEYAKDYLGSADPKDTRVLMSKQADWARSSKEPRAAAEMYLS
AGEHLKAINIIGEHGWVDMLIDLARKLDKAEREPLSRCAAFFKQLNHHGYASETYTKMGD
LKALAQLHVDARHWDEAFSLVEKHPEFRDDVYVPYAQWLAENDRFEEAQKAFHRAGRQAE
AVRVLEQLTHNAVVESRFNDASYYYWMLAMQCLDIARDKEEKKEEMLKKFHRFQLLAELY
HVYHSIHRYTEDPFSSHMPETLFNISRFLLHHLTKDVPLGISKVNTLYTLAKQSKYLGAY
KLARYSYERLQGLRIPPRLQEAMQLGSLTVRSKPFHDSEDLVPMCFRCSTNNPLLNNLGN
VCINCRQPFIYSASSYEVLPLVEFYLEEGIADEEAVSLIDLEQPRADRKSSRWHNMSSGE
SQSLKLNDSVDESEDPFTAKLSFEQGGSEFVPVVVSKSVLMSMSRRDVLIKRWPRPLRWQ
YYRSLLPDVSITMCPSCFQMFHSEEYELLVLQHNCCPYCRRPIDEPN
NT seq 3564 nt   +upstreamnt  +downstreamnt
atgagagcggttccaacatggatagataaagtacacgaccgcgacaaggtcgagcaatgt
atctatgatatagccttcaaaccggatggcactcaactcattgttgctgcaggaaacagg
gtgttggtatatgacacttctgatgggaccttgatacagcctctgaaagggcacaaggac
actgtctactgtgtggcttatgctaaagatggaaagcggtttgcttcaggttctgctgac
aagagcatcatcatctggacatcaaaactggagggaattcttaaatatacacataatgac
tccattcagtgtgtggcgtacaaccctgtcactcatcagttggcctcctgttcctcagga
gattttggtctgtggtccccagagcaaaagtcggtgtccaagcacaaagtcagcagcaaa
atcacatgctgtggctggacaaatgatgggcaatacctggctctgggcatgatgaacggg
gttgtgagcatccgcaacaagaacggggaggagaaagtgaagattgagaggccaggcgga
tcttcctctcccatctggtccatagcctggaacccctcaaaggatgaacacaatgatatt
ttggcggtggctgactggggccagagactgtccttctaccaactcagtggcaagcagatt
ggaaaggaccggctgctgaactatgacccctgctgcgtcagctacttttccaagggcgag
tacatagtgatggggggctcagacaagcaggcctctctctacaccaaagatggtgtgcgt
ctgggccccatcagcgagcagaactcctgggtgtggacctgccgagtcaagccggactcc
aactatgtggtggtgggctgtcaggacggcaccattgccttctttcagctgatcttcagc
acggttcacggcctgtacaaggatcgctacgccttcagagacagcatgactgacgtcatt
gttcaacacctcatcaccgagcagaaagtgaggataaaatgtagagagctggtgaagaaa
atcgccatatacaggaaccgcctggccatccagctgccggagaagatcctcatttacgag
tgttacaccgacgactcgtcggacatgcactaccgcgttaaggagaagatcagtcgccgc
ttcgagtgcaacctgctggtggtgtgctcccgccacatcatcctctgccaggagaagagg
cttcagtgtctctccttcaccaatgtgaaagaaagagagtggttgatggagtctctgatt
cgctacatcaaagtgattggcggcccgccagggagggaggggcttctagtgggtctgaag
aatggttctattttgaagatctttgtggacaacccgtttgccatcacgctgctgaagcag
aacacgtctgtgcgctgcctggacatgagtgcctcgcgcagcaagctggccgtggtggac
gagcacaacacctgcctggtctacgacatcaacaccaaagagctgctcttccaggagccc
aatgcaaacagcgtggcctggaacacccagtgtgaggacatgctgtgtttctcggggaac
ggctacctcaacatcaaggccagtaacttccccgtgcaccagcagaagctgcagggcttt
gtggttggctacaacggctccaagatcttctgcttgcacgtctactccatggcagctgtg
gaagtaccccagtcagctcccatgtatcagtacctggagaggcggatgtttaaagaggcc
tatcagattgcctgcttgggcgtgaccgatagtgactggagagatctggccacggaggcc
ctggaaggcctcgattttgacacagctaagaaggccttcatcagagtgagggatctgcgc
tacctggagctcatcagtagcattgaggagcggaagaagagaggggagagcaacagcgag
ctgtttctggctgatgtgtttgcctaccaggggaagtttcacgaggctgccaagctttac
cggcgcagtggttacgacaacagagcgctcagcatgtacacagacctgcgcatgttcgag
tatgccaaggactacctgggctcggcggaccctaaggacacgcgtgtgctgatgagtaag
caggcggactgggcgcgcagcagcaaggagcccagagctgcagcggagatgtacctgagc
gccggagaacacctcaaggccatcaacatcatcggagagcacggctgggtggacatgttg
atagatctggctcgcaagttggataaagcagagcgagagccgctgtcccgttgcgctgcc
ttctttaagcagctcaatcaccatggttacgcctctgagacttacaccaaaatgggtgac
ctaaaggcactggcacagttacatgttgatgcccggcactgggacgaggccttctccctg
gtggagaagcacccagagttcagagatgatgtgtatgtgccatatgcccagtggctggca
gagaacgatcgctttgaagaggcccagaaagcgttccaccgggcgggcaggcaggcggag
gccgtgcgcgtgctggaacagctcacccacaacgccgtggtggagagccgcttcaacgac
gcctcctactactactggatgctggccatgcagtgtctggacatcgcaagagataaggag
gagaagaaggaggaaatgctgaaaaagttccaccgtttccagctattggctgagctctac
catgtctatcattccatccaccgttacacggaggatccattcagttctcacatgccagag
acgctcttcaatatctcacgcttcctactgcaccacctcaccaaggatgttcctctgggc
atctccaaagtgaacaccctgtatacgctggcgaagcagagtaagtatctgggagcgtat
aagctggcgcggtactcctacgagcggctgcagggcctgcgcatccccccgcgcctgcag
gaagccatgcagctgggcagcctcaccgtgcgctccaaacccttccacgacagtgaggac
ttggtccccatgtgttttcgctgctccaccaacaaccctctcctcaataaccttggcaat
gtctgtatcaactgcagacagcccttcatctactcggcatcctcctatgaggtgctgccg
ctggtggagttctacctggaagaggggatcgcagatgaggaggccgtctcattgattgac
ctggagcagccacgggcagacaggaagagctcccgctggcacaacatgagcagcggggag
tcccagtccctgaagctgaatgacagtgtggatgagtcagaggaccccttcacagccaaa
ctcagctttgagcaggggggcagtgagtttgtcccggtggtggtgagcaagagtgtgctg
atgtccatgtccagacgggacgtcttgatcaagcgctggccacgccctctcagatggcag
tactaccgctccctgctgcccgacgtcagcatcaccatgtgcccatcttgcttccagatg
ttccacagtgaggagtacgagctgctggtcctgcagcacaactgctgtccctactgccgc
cggccaatcgatgagcccaactga

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