Clupea harengus (Atlantic herring): 105910623
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Entry
105910623 CDS
T09045
Symbol
arhgef1b
Name
(RefSeq) rho guanine nucleotide exchange factor 1b isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04270
Vascular smooth muscle contraction
char04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
105910623 (arhgef1b)
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
105910623 (arhgef1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105910623 (arhgef1b)
Membrane trafficking [BR:
char04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
105910623 (arhgef1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
Sigma70_ner
PH_13
Motif
Other DBs
NCBI-GeneID:
105910623
NCBI-ProteinID:
XP_031432910
UniProt:
A0A6P8GCX6
LinkDB
All DBs
Position
11:2747047..2801862
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AA seq
1028 aa
AA seq
DB search
MDYEDYNDGRGHWGAQSANPAMSIIGAEDEDFENDLEPMVDDDCVTFTSIELLKSRPTHL
LVFLQHVMLQFDCAPVLCYLHADILRNLSAKEAKKQFVEFYNNFLDKGAVLRVSVPLAVS
YELDRTRADLIPEDQQKRFAQEVQSMQGQEVIRQLEDFRQKRMMGMTPNEQELLEVENHH
STDRIPTEMKEKAVAENLLDKIAEMHPTIVADEDKCSAIFGAVVYYMKQLGVKTRATDSK
KSRGFFRKKGKDKKEEPKLPKPRSGLPSILREAGSWMSGSSEIKTTKLDNEGDKDKSSHE
RKGSSGNAPSRGVTPDVSSAPSASKSKSGSTSSSSQAGSEVTDGAATINISITSSPDSDI
GPPSSRSDSQSVSEGGEVSPATQPGAFLWEGAGPSPSEITVEENQDKDSTDGGLVLPDTP
PIGPASGPSPQPEEVEPRLQELEQDPPNWRDQASPEALRDLSKKETKRQEVINELFATEH
AHVRMLSVLQTVFARPMERAGLMTPEEVAAIFPSLDDIIELHCGFYENLKKLRQDDGYIV
KSIASTLLNRFSGSEGEWFQKLTARFCSHQSWALEQIKSRQKSTPRFNTFIQDAESSPLC
RRLQLKDIIPIEMQRLTKYPLLLENVAKSTEREDERQGMQKVAECCRKILNHVNDEVKSM
ENLLLLKEYQRKLDTSGLKPSNELFTEYKSIDLTTREMLYEGPLIWRVTKEKALDVQCVL
LGDLLVLLQKQDDKMLLKCQSKSTLVQEGKQMLSPIIKLESAFLREVATDLKAFYVIFTW
ESGAQIYELVAHSIKERRTWTEMIKKAVDDFKTSGGGAPALERGRFGSLIPGSAANPSSP
TASMHPPLSPAENGGDSLKNSSDRDKDLLPDEKGADPHTSLMEYLAANDFDLIGHSNSPQ
EKMASGMVDELMSLKRLLVGSISLSEDSDVAGENGGAGPEVPEEVDGCQSPATEEATTDG
QTEEGGLKEEEESGISAPMVLSQERMDEVRTTLENMEEKLKKLQSIEEAHHKLQDLLAKF
SLQRGNYQ
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggattatgaagactacaacgacgggcgggggcattggggtgcccagagtgccaatcca
gccatgagcatcatcggggcagaagacgaggacttcgagaatgacctggaacctatggtg
gatgacgactgcgtcacctttaccagcattgagctgctgaagagcaggccgacccacctg
cttgtgttcctgcaacacgtcatgctgcagttcgactgcgccccagtgctctgctacctt
cacgctgacatcctgaggaacctgagcgccaaagaagccaagaagcagtttgtggagttc
tacaataacttcctggacaagggagctgttctcagagtatctgtgcctcttgcagtcagc
tatgagttggaccgcacccgggcagacctcatcccagaggaccagcagaagcggtttgcg
caggaagtccagagcatgcagggccaggaggtgatccggcagctggaggacttcaggcag
aagaggatgatgggaatgacgcccaacgagcaggagctgctggaggtggagaaccaccac
tccaccgaccgcattcccacggagatgaaggagaaggccgtggccgagaacctgctggac
aagatagccgagatgcaccccacgatcgtggcagatgaggacaaatgctcggccatcttt
ggagccgtggtgtactacatgaagcagctgggggtgaagaccagggccaccgacagcaag
aagtctcgcggattcttccggaagaagggcaaggacaagaaggaggagcccaagctgccc
aagccgaggagcggactacccagcatcctccgggaggccgggagctggatgagtgggagc
agtgaaatcaaaacaactaaattggacaacgaaggtgataaagacaagagttcccatgag
cgtaaagggtccagtgggaacgccccctcccgtggagtgactccagacgtgagctccgct
ccgtccgccagcaaaagcaagtcgggctccacgagctccagcagccaggcggggtcagag
gtcaccgatggtgcagccaccatcaacatcagcatcacctccagccctgacagcgacata
ggtccgcccagcagtcgctccgactcccagtctgtgtctgagggtggcgaggtgtctccc
gccacccaaccgggagcgttcctctgggagggcgccggccccagccccagcgagatcacc
gtggaggagaaccaggacaaagacagtaccgatggcggcctggtcctgcccgacactcct
cctattggccccgcctctggcccctccccccagccggaggaggtggagccccgcctacag
gagttggagcaggacccgcccaactggagggaccaggcctctcccgaagctctcagagac
ctgagcaagaaggagaccaagaggcaggaggtcatcaacgagctgtttgctactgaacac
gctcacgtgcgcatgctgagcgtgctgcagacagtgtttgcccggcccatggagagggcg
gggcttatgactcccgaggaggtggccgccatcttccccagcctggacgacatcatcgag
ttgcactgtggtttctacgagaatctgaagaaactgcgtcaggacgacggctacatcgtc
aaaagcatcgcctccacactgctcaacagattcagcgggtcggagggcgagtggttccag
aagctcacggcccgcttctgcagccaccagtcctgggcactggagcagatcaagagcagg
cagaagagcacacctcgcttcaacaccttcatccaggatgccgagagcagtcccctgtgc
cggcggctgcagctgaaggacatcatccccatcgagatgcagcgtctgaccaagtacccg
ctgctgctggagaacgtggccaagagcacggagcgcgaggacgagcggcagggcatgcag
aaggtggccgagtgctgccgcaagatcctcaaccacgtcaacgatgaggtcaagagcatg
gagaacctgctgttattgaaagaataccagcgcaagcttgacacctcagggctgaagccc
agcaatgagctcttcactgagtacaagagtattgacctgacaaccagggagatgctgtat
gaaggacccctgatctggagggtgacgaaggagaaagctctagatgtgcagtgtgtgttg
ctgggcgacctgctggtgctgctgcagaagcaggatgataagatgctgctcaagtgccag
agcaagagcaccctggtgcaggagggcaagcagatgctcagccccatcatcaagctggag
tccgctttcctcagagaagtggccacagacctcaaggcgttctacgtgatcttcacctgg
gagagcggcgctcagatctacgagctggtggcccactccataaaggagaggaggacttgg
acagaaatgatcaagaaggcggtggacgacttcaagaccagcggagggggagcgcccgcc
ctggagaggggccgctttggcagtctgataccagggagcgctgccaatcccagcagcccc
acagccagtatgcatcctcctctcagccctgcagagaatggaggggactccctaaagaac
agcagtgatcgagacaaggacctcctccctgatgagaaaggtgcagacccacacacttcg
ctgatggagtacctggcagccaatgacttcgacctgattggccacagcaacagccctcag
gagaagatggccagtggcatggtagatgaactcatgtccctcaagaggctattggttggc
agcatcagcctatcagaagactccgatgtggctggcgagaacggaggggcagggcctgag
gtgccggaagaggttgatggatgtcagtcaccagcaacagaggaggccaccaccgatggg
cagacagaagaaggagggctgaaggaggaagaggagagcgggatcagcgctccgatggtg
ctgtcgcaggagcgcatggacgaggtgcggacgaccctggaaaacatggaggagaagctg
aagaaactgcagagcattgaagaagcgcatcacaagttgcaagatctgcttgcaaagttc
tctctccagagagggaactaccagtga
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