KEGG   Clupea harengus (Atlantic herring): 105910963
Entry
105910963         CDS       T09045                                 
Name
(RefSeq) lysine-specific demethylase 2A-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    105910963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:char03000]
    105910963
   04121 Ubiquitin system [BR:char04121]
    105910963
   03036 Chromosome and associated proteins [BR:char03036]
    105910963
Enzymes [BR:char01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     105910963
Transcription factors [BR:char03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    105910963
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     105910963
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    105910963
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     105910963
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD JmjC F-box PHD Nop14 Cupin_8 BUD22 LRR_At5g56370
Other DBs
NCBI-GeneID: 105910963
NCBI-ProteinID: XP_031413960
Ensembl: ENSCHAG00000003934
UniProt: A0A6P8EPA7
LinkDB
Position
20:1670770..1684178
AA seq 1234 aa
MPDPDFSVSDVKLFVGSRRMIDVMDVTTQKGIEMSMGQWRRYYETPPSQREKLYNVISLE
FSHTKLENLVKRPASVDVIDWVDNMWPRHLKERQRDSTNSIIDMQYPKVQKYCLMSVEGS
FTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLELYENWVLSGKQGDIFLGDKASQCQR
IELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRVPAKFRYP
FYYEMCWYVLERYLYCLTNVSHLTPEFQKQSLGIGLKREDFHQEQEPNGQTKEKEEEEEE
EEGEEKDQEDNKEKEEEEEVKKEEVKEEEEDEEEASASPAGKLGVKVHLTPLELEGLWHL
LNKLEELPTHKKCVPSGIRNAPALLSDIRTLLEEHADDDPGLSYTGKPIVKWPRRPSWYR
PPTPPPALVYRPRPPGAAAKLSGPRAPRRPAEALRRRRVRCKRCEACLRSECGDCIFCRD
MKKFGGPGRLKQSCLLRHCHTPGLPNSAVCTVCGEGNPDGENSTPTLMECSACAKITHPE
CLKEPREGVINMDLPSYWKCPRCIQEKKTESGNSSSDDDEDKSSAVLGARVSASVPPAKH
AHREGIGVREGRRGRRPLTPSRRLPPPSQRLLLQQQQNRKRAGALELQLRKRIKLERNKI
LQSKPSSLSLSPKLLRQRSAERGGGDKTGLGRGASRGRGASALQIPTLTPVGRGRGRGVR
LRGGGRGGGGGGGAERGSGEMQRGRVERDDTADDSEDEEDEEEERKENRPQQQRARRGKE
QTQEEDEEEEEEDDNEDDSEEGEQKNGGGERDDGEEEEEEEEEEDEEEEGSRPGPPSAAV
LLGDEARNQNSCLTVKLQQVSRGHRDPNAIVPKLEAAMTPRSPPSVQRASLLRPPLRNGA
SHASPHPATPAPRSARPEKPLSSGPGRTAGRGSRVHWQTNAHSSSSSSSSLHSSLQLSAR
DGGSGPGFEKEVWVSVFRYLSQAELCVCMAVCKSWYKWGCDKRLWVKIDLNRCRSLSAQA
LSGIIKRQPVSLDLSWTAISKKQLTWLINRLPGLKDLVLSGCSWMCLSALSSTTCPLLRS
LDLRWTEGIRDAQIRELLSPPGSENRTQLRNLQVLRLCGLEISEATLRLIIRHMPQLTRL
ELSHSPLTDQALNLLTAVGSSTRDTLTHLNLAGCSKLSDRCLAYLKRLSCLRLLDLRNSK
GVSRQACETFISELFVNANALYCLSDDKLIQRIS
NT seq 3705 nt   +upstreamnt  +downstreamnt
atgccagatccggatttcagtgtgagcgacgtgaagctgtttgtagggagccgtaggatg
attgacgtgatggacgtcacgactcagaagggcatcgagatgtctatgggccagtggagg
cgttactacgagacgccgccgtcccagagggagaagctctacaatgtcatcagcctggag
ttcagtcacaccaaactggagaacctggtcaagaggcccgcatcggtggacgtgatcgac
tgggtggacaacatgtggccgcgccatctgaaggagagacagcgggattcgaccaattcc
ataatagacatgcaatacccaaaagtacagaagtattgtctcatgagtgtcgagggctcc
ttcactgacttccacattgatttcggtggcacttctgtttggtaccacatcctacgagga
ggaaaggtgttctggctgatcccacccactccccagaacctggagctgtacgagaactgg
gtgctgtcggggaaacagggggacatcttcctgggtgacaaagcgtcgcagtgccagcgc
atcgaactcaaacaggggtacactttcatgataccctcagggtggatccatgctgtctac
actccagtggacacgctggtgttcggagggaacttccttcacagcttcaacattcccatg
cagctcaacatttatagtattgaggaccggacaagggtgccggctaagttccgttaccct
ttctattacgagatgtgttggtatgtgctggagaggtacctgtactgcctgaccaacgtc
tcacacctcaccccggagttccagaagcagtcgctcggcattggcctgaaacgagaagac
ttccaccaggaacaggaaccgaatggccaaaccaaagagaaggaggaggaggaggaggag
gaggagggcgaagaaaaagaccaggaagacaacaaagagaaggaggaggaggaggaggtg
aagaaggaggaagtgaaggaagaggaggaggatgaggaagaggcctcagcgtctccagct
ggtaagctgggtgtgaaggtgcacctgacgcccctggagctggaaggcctgtggcacctg
ttgaacaagctggaggagctgcccacccacaagaagtgcgttccatccggcatccgcaac
gcccccgccctgctcagcgacatacggacgttgcttgaggaacacgctgatgatgaccct
ggattgtcctacactggaaaacccatcgtgaaatggcccagacggccctcgtggtaccgc
ccccccacccctccccctgcgctggtctaccggccgcggccccccggagcggcggcgaag
ctgtcggggccccgggccccccggaggcctgcggaggcgctgcggcggcggcgggtgcgc
tgcaagcgctgcgaggcgtgcctgcggagcgagtgcggcgactgcatcttctgccgcgac
atgaagaagttcggcgggcccggccgcctcaagcagtcctgcctgctgcgccactgtcac
accccgggtttgcccaactctgcggtgtgtaccgtgtgtggcgagggcaaccccgacggg
gagaactctaccccgacacttatggagtgctctgcctgtgccaagatcacacacccagag
tgcctcaaggaaccgagagagggtgtgattaatatggacttgcccagttactggaagtgt
cccagatgtattcaggagaagaaaaccgagtctggcaacagtagtagtgatgatgatgaa
gataaaagcagtgccgtcttgggcgcccgggtctccgcgtcggtgccaccagccaaacat
gcccaccgggagggcatcggggtacgcgagggccgcagaggaaggcgacccctgaccccg
tccaggcgcctgccgcccccgtcccagaggctgctcctccagcaacagcagaacaggaag
agggctggagccctggaactacagctcaggaagaggattaaattggagcgaaataagatc
ttgcagtcgaagccgtcgtctctttctctctcccctaagctcctgcgccagcgcagtgcg
gagagggggggcggggacaagaccgggctgggccgcggagcctccagaggtagaggagcg
tcggccttacagatccccaccctgacgcctgtgggccggggcaggggccggggcgtcagg
ctcagggggggagggagagggggaggaggaggaggaggtgcggagaggggcagcggggag
atgcagcgcggcagagttgaacgggatgacacggccgacgacagcgaggacgaggaagac
gaagaggaggagaggaaggagaaccggccgcagcagcagcgggccagacgagggaaggaa
cagacacaggaggaggacgaagaggaggaggaggaggacgacaacgaggacgacagtgaa
gaaggagagcaaaagaatggtggaggggagagagacgatggagaggaggaagaggaggag
gaggaggaagaagacgaggaggaggaggggagtaggccgggaccaccgagtgcagctgtt
ctgctgggcgacgaggcacggaaccagaattcctgcctgactgtgaaactccagcaggtg
tcccgtggccaccgtgaccccaacgccatcgtccccaagctggaggctgccatgacgccc
cgctcgccaccctccgtccagcgcgcctccctgctccgccctcccctccgcaacggagcc
tcccacgccagccctcatccggccacgccggcgccacgctctgcacgcccagagaagccc
ttatccagcggcccgggccgcaccgcggggcgaggatcccgggtacactggcagaccaac
gcccactcctcctcatcatcgtcctcctccttacactcttcgctccagctctctgcccgg
gacggagggagtgggccgggctttgagaaggaggtgtgggtgtccgtgttccggtacctg
agccaggccgagctctgcgtctgcatggccgtctgcaagagctggtacaagtggggctgt
gacaagcgcttgtgggtgaagatcgacctgaaccgctgccgctccctcagcgcccaggcg
ctctcgggcatcatcaaacgccagcccgtctccctggacctctcctggacagccatctca
aagaagcagctcacctggctcatcaacagactaccaggcctaaaagacctggtgttgtcc
ggctgctcctggatgtgtctctctgccctgagctccaccacctgtcctctgctgcgctcc
ctggacctgcgttggactgaagggatcagagacgcccagatccgagagctgctgagtccc
ccaggctctgagaaccgcacgcagctgcgtaacctgcaggtcctgcgtctgtgtgggctg
gagatcagcgaggccaccctgcggctcatcatccgccacatgccgcagctgacgcgcctg
gagctctcccacagccccctgaccgaccaggccctcaacctgctcaccgccgttggctcg
tccacccgcgacacactcacacacctcaacctcgccggatgcagtaagctgtcggatcgc
tgtctggcgtacctgaagcgtctgtcatgtctgcgcctgctggacctccgcaacagcaag
ggcgtgtcgcgtcaggcctgcgagaccttcatctccgaactgtttgtcaacgccaacgcg
ctctactgcctatcagatgacaagctcatccagaggatatcataa

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