KEGG   Clupea harengus (Atlantic herring): 105911302
Entry
105911302         CDS       T09045                                 
Symbol
cd40lg
Name
(RefSeq) CD40 ligand isoform X2
  KO
K03161  tumor necrosis factor ligand superfamily member 5
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04060  Cytokine-cytokine receptor interaction
char04514  Cell adhesion molecules
char04672  Intestinal immune network for IgA production
Brite
KEGG Orthology (KO) [BR:char00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    105911302 (cd40lg)
   04514 Cell adhesion molecules
    105911302 (cd40lg)
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    105911302 (cd40lg)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:char04052]
    105911302 (cd40lg)
   04090 CD molecules [BR:char04090]
    105911302 (cd40lg)
Cytokines and neuropeptides [BR:char04052]
 Cytokines
  Tumor necrosis fators
   105911302 (cd40lg)
CD molecules [BR:char04090]
 Proteins
  105911302 (cd40lg)
SSDB
Motif
Pfam: TNF
Other DBs
NCBI-GeneID: 105911302
NCBI-ProteinID: XP_031443132
Ensembl: ENSCHAG00000014075
UniProt: A0A6P8H5Z9
LinkDB
Position
20:4455511..4457985
AA seq 279 aa
MINTYHTSLPPPPVPPRMVHGRPEPRQHTGLLWFLSVVLVLHMMLTFGGFVYLFDKGDQA
SHWEGEFHEKYLDDFLILKRLQRCDDDDLDDQSLLDCKQLLDKFRNVMAKASKTEGRVAM
LTGEHYRGAVAHMPVKTSSKPCTATDNQACALEWNSDHSTKANVDTAGDSRLSIKHSGYY
YVYSQVTFSVKNSKAAPTNTIRHVKWKNSVKLFSKKVELEESDEVLLRAYCPSNLSSQCT
ASQGGVFKLEKDEQLYVQVTDLSWVNYDWNATFFGLYKL
NT seq 840 nt   +upstreamnt  +downstreamnt
atgataaacacctaccacactagtctccctccgccaccagtgcctccccggatggtccac
ggcaggcctgagcctcggcagcacacaggcttgctctggttcttgtctgtggtgctggtg
cttcacatgatgctcacgtttgggggattcgtctacctttttgacaagggcgaccaggcc
agtcactgggaaggagaatttcatgaaaagtaccttgatgacttcctcatccttaaaaga
ctacagagatgtgatgatgatgacttagatgaccagtcactgctcgactgcaaacagctt
ctcgacaaattcaggaacgttatggcaaaggcttcaaaaacagaaggcagagttgccatg
ttgactggggaacattaccgcggagctgtggcacacatgccagtgaagacaagttcgaag
ccatgcacagcaacagacaatcaggcctgcgcgctagagtggaactctgaccactcaact
aaggccaatgtggacacagcaggcgacagcagactctccatcaagcactcgggctactac
tatgtctactcgcaggtcaccttctccgtcaagaactccaaagcagcgccaacgaacacc
atcagacatgtcaagtggaagaattcggtcaaactgtttagcaagaaagtggaacttgag
gagagtgatgaggtcttactcagagcctactgcccgtccaacctatcatcgcaatgcacg
gcctcccagggaggagtgttcaagctggagaaggacgaacagctgtacgtgcaggtgact
gacctgagctgggtgaactacgactggaatgccaccttctttggattatacaaactttaa

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