Clupea harengus (Atlantic herring): 105912481
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Entry
105912481 CDS
T09045
Name
(RefSeq) spectrin family protein isoform X1
KO
K23932
spectrin beta, non-erythrocytic 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04517
IgSF CAM signaling
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
105912481
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105912481
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
char04812
]
105912481
Cytoskeleton proteins [BR:
char04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
105912481
Intermediate filaments
Intermediate filament-binding proteins
105912481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
PH_17
NPV_P10
Motif
Other DBs
NCBI-GeneID:
105912481
NCBI-ProteinID:
XP_031427904
Ensembl:
ENSCHAG00000019982
UniProt:
A0A6P8FNK3
LinkDB
All DBs
Position
8:15227336..15317968
Genome browser
AA seq
2414 aa
AA seq
DB search
MSTISPTDFDSLEIQQQYNDINNRWDLASETDWDNENSSARLFERSRIKALADEREAVQK
KTFTKWVNSHLGRVTCRIGDLYTDLRDGRMLIRLLEVLSGEQLPKPTKGRMRIHCLENVD
KALQFLKEQKVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETGDNKEKKSAKE
ALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRSDLIEFDNLKRSNAHYNLQNA
FNVAEKELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMKALAVEGKRIGKVLDYA
IEADQLIEKYESLASELLQWIQQTIATLNDRQLANSLNGVQNQLQAFNTYRTVEKPPKFT
EKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQ
EKLEMLAARFDRKAAMRETWLSENQRLVSQDNFGCDLGAVEAATRKHEAIETDIGAYGER
VAAVEAVARELEAEGYHEVRRIAARRDNVLRLWDYLKELLSARRERLNSHRDLQRLLQEM
KYIMDWMADMKGRLQSQDSGKHLHDVEDLLQTHNLVEADTSAQAERIKAVQASAQRFTSD
GQIYKPCDPALVSEKVTQLGQAYEELGVLAGTRRARLEESRRLWQFLWELGEEAAWIREQ
EQILAGGDCGRDLSSALHLLSKHEAFRDEMAARYGPLGHSIASGEQLVREGHSGAPEVTE
RITDVRAQWAHLEETSRHREQNLKESVALHQFQTDANDMEAWISETLRQVSSQEVGHDEF
STQTLARKQREVEEEIQSHRSLIDSLHEQALALPSAFTHSPQVEGRLPSIEQRYEELESL
SSARRQALEGALALYRMYSEAGACQLWVEEKEQWLHGMEIPTKLEDLEVVQQRFETLEPE
MNNLGTRVTDVNQVAEQLLKSDNRCKDQINHTQDQLNNRWKEFQGLADQKKQDLESALNI
QNYHLECNEIQSWMKEKTKVIESTQGLGNDLAGVMALQRKLTGMERDLEAIQGKLDDLKQ
EAEKLAEEHPDQAQEIQARLAGIQEVWEELNATMKRREESLGEASKLQGFLRDLDDFQSW
LSRTQTAVASEDTPTSVVEAEQLLTQHEAIKNEVDNYREDYERMRATGAEVTQGQTDAQH
MFLAQRLQALDTGWHELRRMWENRHALLAQAFDFQTLLRDAKQAEGFLNSQEYVLSHTEM
PSSLQGALEAIKKHEDFMTTMEASEEKINGVVDAGRRLVSDGNANADKIQEKADSIQDRH
QKNKESSSELLAKLKDNRELQHFLQDGQELTLWINEKMLTAQDMSYDEARNLHSKWQKHQ
AFMAELASNKDWLDKIDKEGQALVSEKPELEPVVRQTLDGLQKQWEELENTTRTKAQCLF
DANRAELFTQSCSALDSWVQNQSSQLQSDDFGKDLTSVNILLKKHQMLEHQMEVREKEVQ
SLQSQALALAQEDSGIAEVDGQQRRVADSFSQLQEPLHLRRQQLLSSKEAHQFNRDLEDE
ILWVKERMPLANSTDHGKDLPSVQLLSKKNQTLQKEIQGHQPRIDDILAHGRSIGTATDG
GDGERQAALEGRLGELGEQWARLISETDERHSRLQEANRAQQFYADAAEAEAWMGEQELH
MMSEEKAKDEQSAVVMVKKHQILEQALEDYAQTIHQLANSSRFMVTGEHPESERINLRQA
QVDKLYAGLKDLAEERRGRLQERLRLTQLKREVDDLEQWIAEREVVAGSHELGQDIEHVT
MLRDKFREFARDTSTIGQERVDVVNGQADDLIESGHPENASVAEWKDGLNEAWADLLELI
DTRTQMLAASYELHRFHQDAREALGRVREKTENLSADLGRDLNTVQHLHRQHNAYEHDIQ
ALSGQVTQVQDDAARLQKAYAGEKAEDIHRHERSVTEAWEGLLAAGQARRLLLLDTVEKF
RFLNMVRDLMLWMDGVNLQIQSHDSPRDVSSAGLVIAHHQDIKSEIETRADSFNACHEMG
NSLINNNHYAADEIREKLDQLQAKRDEINQKWQDKMDHLQIVLEVLQFGRDASVAESWLA
GQEPLVRAAELGANVDEVESLIKRHEAFEKLAAGWEDRFSLLEKLTTLEEHEMQKRREEE
ERARRPPTPPPAEVVASDGETLAHDSAARTSLDQTTLNQSVSVNGVHSDQDTSQQSLSVS
MSELKKPDPKPVSKPMSKPKAQERMARCVSACVPVLSHQINATLRHKMHMGSESESVNGP
GRDSGLPSSSRHDPSATLPGRGGAEPGVDTTEGMLNRKHEMESHNKKAASRSWQNVYCVL
RKGSLGFYKDNKSASNGIPYHGEVPISLGEATCVIANDYKKRKHVFKLRLGDGKEFLFQA
KDEPEMSSWIRAIHSSMQPAAAEYSPGPNRGLSRAMTMPPISPSSGDTGGVTMRNKDGKD
KDREKRFSFFGKKK
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatctctccgaccgactttgacagcctggagatccagcagcagtacaatgac
atcaacaaccgctgggacctggcctccgagaccgactgggacaacgagaacagctcggcc
cgcctctttgagcgctcgcgcatcaaagctctcgctgatgagcgagaggccgtgcagaag
aagaccttcaccaagtgggtgaactctcacctgggccgcgtcacctgtcgcatcggtgac
ctctacactgacctgcgtgatggacgcatgctcatccgcctgctggaggttctctccgga
gaacagctgcctaaacccactaagggccgcatgcggatccactgcctggagaacgtggac
aaggccctgcagttcctcaaggagcagaaggtgcacctggagaacatgggctcccacgac
atcgtcgacggcaaccaccgcctcaccctcggcctcatctggaccatcatcctccgcttc
cagatccaggacatcagcgtggagaccggggacaacaaggagaagaagtccgccaaagag
gcgctgctcctctggtgtcagatgaagactgctgggtatcccaatgtcaacgtgcacaac
ttcaccaccagctggagagatggcctcgcgttcaatgccatcgttcacaagcacagatcg
gacctgattgagtttgacaacttgaagcgctccaatgctcattataacctgcagaatgcc
tttaacgtggctgagaaagagctgggactgaccaagctgctggatcccgaggatgtgaat
gtggaccagcctgatgagaagtctatcatcacctatgtggccacatactaccactacttc
tccaagatgaaggccctggctgtcgagggcaagagaattggcaaggtgctggactatgcc
atcgaggcagatcagctgatcgagaagtatgagagcctggcgtctgagctgctgcagtgg
attcagcagaccatcgctacgctaaacgacagacagctggccaactccctcaatggtgtg
cagaaccagctccaggccttcaacacctaccgcacggtggagaagccacccaagttcacg
gagaagggcaacctggaggttctgttgttcaccatccagagcaagatgagggccaacaac
cagaaagtctacatgcctagagagggcaagctcatctctgacatcaataaggcgtgggag
cgtctggagaaggcggagcatgagcgtgagctggcgctgaggaatgaattgattcggcag
gagaagctggagatgctggcggcacgctttgaccgcaaggcggccatgagggagacctgg
ctgagtgagaaccagcgtctggtttcacaggacaactttggctgcgacctgggcgcagtg
gaggcggccacgaggaagcacgaggccatcgagacggatatcggggcgtacggcgaacgt
gtggcggctgtggaggcggtggcccgcgagctggaagcggaagggtaccacgaggtgcgg
cgcatcgccgcgcgccgcgacaacgtgctgcggctctgggattacctgaaggagctgctg
tcggcgcggcgcgagcgcctcaactcccaccgtgatctacagcgcctcctgcaggagatg
aagtacatcatggactggatggctgacatgaagggccggctgcagtctcaggacagtggt
aagcacctgcatgatgtggaggacctgctgcagacacacaaccttgtggaggctgacacc
tccgctcaggctgagagaatcaaagcggtgcaggccagcgcacagcgcttcacatcagat
ggacagatctataaaccgtgtgacccagcgctggtgagcgagaaggtgacccagctgggc
caggcgtacgaggagctgggtgtgctggccggcacgcggcgcgcgcgcctggaggagtct
cggcgcctgtggcagttcctgtgggagctgggcgaggaggcggcgtggatccgcgagcag
gagcagatcctggccggcggcgactgtgggcgcgacctctcgtcagcgctgcacctgctc
agcaagcacgaggccttccgtgacgagatggccgcccgctacggcccgctgggccacagc
atcgcctccggcgagcagctggtgcgcgagggccactccggtgcgcccgaggtgacggag
aggatcacggacgtgcgcgcccagtgggcacacctggaagagacttcccggcatagagag
cagaatctgaaggagtctgtggctctgcaccagttccagacggacgctaatgacatggag
gcgtggatctcggagacactcagacaggtgtccagtcaggaagtgggccatgatgagttc
tccacccagactctggcccgcaaacagagggaagtggaggaggagatccagagccaccgc
tccctcattgactccctgcacgagcaggccctcgcactgccctcagccttcacacactcg
ccgcaggtggagggccgtctgccgtccatcgagcagcgctacgaggagctggagtctctg
tcgtcggcgcgacgccaggcactagagggcgctcttgcactctaccgcatgtacagtgag
gctggagcctgtcagctgtgggtggaggagaaggagcagtggctccacggcatggagatc
cctaccaaactggaggacctggaggtggtgcagcagaggtttgagactctggagccagag
atgaataatctgggcacccgtgtcacagacgtcaaccaggtggccgaacagctgctgaag
tccgacaaccgctgcaaagaccagattaaccacacacaagaccagctcaataacaggtgg
aaggagttccaggggctggccgaccagaagaagcaggacctggagtcggccctgaacatc
cagaactaccacctggagtgcaacgagatccagtcctggatgaaggagaagaccaaggtg
atcgagtccactcagggcctcgggaacgacctggccggggtcatggccctgcagcgcaag
ctcaccggcatggagcgagacctggaggccattcagggtaagctggacgacctgaagcag
gaggcggagaagctggctgaggagcacccagaccaggcccaggagatccaggcgcggctg
gccgggatccaggaagtgtgggaggagctcaacgccaccatgaaaaggcgcgaggagtcg
ctgggcgaggcgtccaagctgcagggcttcctgcgcgacctggacgacttccagtcgtgg
ctgtcgcgcacccagacagccgtggcctccgaggacacccccacgtcggtggtggaggcc
gagcagctgctcacgcagcacgaggccatcaagaacgaggtggacaactaccgcgaggac
tacgagcgcatgcgcgccaccggcgccgaggtcacccagggccagacggacgcccagcac
atgttcctggcgcagcggctgcaggcgctggacacaggatggcacgagctgcgccgcatg
tgggagaaccgccatgcgctgctggcccaggctttcgacttccagacgctcctgagggac
gccaaacaggccgagggcttcctcaacagccaggagtacgtgctgtcccacacagagatg
ccctcgagcctgcagggggcgctagaggccattaagaagcatgaggacttcatgaccact
atggaggccagcgaggagaagataaacggtgtggtcgatgccgggcgccgcctcgtttct
gatggcaacgccaacgctgacaagatccaggagaaggccgactccatccaggacaggcac
cagaagaataaggagtcgtccagcgagctcctggccaaactgaaggacaacagagagctg
cagcacttcctccaggatgggcaggagctcactctgtggattaacgagaagatgctgacg
gctcaggacatgtcctatgatgaggcccgtaacctccacagcaagtggcagaagcaccag
gccttcatggcagagctggcctccaacaaggattggctggacaagatcgacaaggagggc
caggccctggtgagtgagaagcctgagctggagccggtggtgcgtcagactctggatggg
ctgcagaagcagtgggaggagctggagaacaccaccagaaccaaggcccagtgcctgttc
gacgccaaccgggccgagctgttcacccagagctgctctgcactcgactcatgggtccag
aatcagtcctcgcagctgcagagcgacgatttcggcaaggacctcaccagcgtcaacatc
ctgctcaagaagcaccagatgctggagcaccaaatggaggtgcgtgagaaggaggtgcag
tcgctgcagtcccaggcactagccctggcccaggaggattctgggatagcggaggtggac
ggccagcagcggcgtgtggccgacagcttttcccagctgcaggagcccttgcacctcaga
cgccagcagctcctctcctctaaggaggcccaccagtttaaccgagacctggaggacgag
atcttatgggtgaaggagaggatgcctctggccaactccacagaccacggcaaagacctg
cccagtgtgcagctcctcagcaagaagaaccagactctccagaaggagatccagggccac
cagccccgcatcgacgacatcctggcgcacgggcgcagcatcggcacggccacggacggc
ggtgacggggagcggcaggcggcgctggaggggcgcctgggggagctgggcgagcagtgg
gcgcggctcatctccgagacggacgagcggcactcgcggctgcaggaggccaaccgggcg
cagcagttctacgccgacgccgcagaggccgaggcctggatgggcgagcaggagctacac
atgatgtccgaggagaaggccaaggatgagcagagtgctgtggtgatggtgaagaagcac
cagattctggagcaggcgctggaggactacgcccagaccatccaccagctggccaacagc
agccgattcatggtcaccggcgagcaccccgagagtgagcgtatcaacctgcgtcaggcc
caggtggataagctgtacgctgggctgaaggacctggcggaggagcggcgggggcgtctg
caggagcgcctgcgcctcacgcagctcaagcgcgaggtggacgacctggagcagtggatc
gccgagagggaggtggtggccggatcccacgagctcggacaggacatcgagcatgtcacg
atgctacgtgataagttccgcgagttcgcccgcgacaccagcaccatcgggcaggagcgc
gtggatgtggtgaacgggcaggcggacgacctgatcgagtcgggccacccggagaacgcc
agcgtggccgagtggaaggacggcctgaacgaagcctgggccgacctgctggagctgatc
gacacgcgcacgcagatgctggcggcctcgtacgagctgcaccggttccaccaggacgcg
cgcgaggcactgggccgcgtgcgcgagaagaccgagaacctcagcgccgacctcggccgc
gacctcaacaccgtgcagcacctgcaccgccagcacaacgcctacgagcacgacatccag
gcactcagtggacaggtgacgcaggtgcaggatgatgcggcgcgtctgcagaaggcgtat
gccggtgagaaggcagaggacatccatcgccacgagcgctcagtcaccgaggcatgggag
gggcttctggcggccggccaggccaggcggctgctcctattggacaccgtggagaagttc
cgcttcttgaacatggtgcgtgacctcatgctgtggatggacggggttaatctgcagatc
caatcacatgacagtccaagggatgtgtcatctgctgggctggtcattgcccaccatcag
gacatcaagtctgaaatcgagaccagagcagacagcttcaacgcctgtcatgagatgggc
aactccctgatcaacaacaaccactatgccgcagatgagatccgggagaagctggaccag
ctccaggccaagagagacgagatcaaccaaaagtggcaggacaagatggaccacctgcag
atcgttctggaggtgttacagttcggccgtgacgcctcagtggcggagtcttggctggct
ggccaggagccgctggtgcgggcagccgagctgggcgccaatgtggatgaggtggagagc
ctcatcaagcgtcacgaggccttcgagaagctcgctgccggctgggaggataggttctcc
ctgctggagaaactcaccacgcttgaagagcatgagatgcagaagaggcgagaggaggag
gagagagcaaggcgacctcccactcctccccccgctgaagtggtagcgtccgacggagaa
actctggcccacgactctgccgccagaaccagcctggaccagaccacactcaatcagtcg
gtatctgtgaatggagttcacagtgatcaggacacctcacagcagtcgttatcagtctca
atgtcagagctcaagaagcctgatcctaagcccgtgtctaaacctatgtctaagcccaag
gcacaggaacgtatggctcgttgtgtctcagcctgtgtcccagtgttgtcgcatcaaatt
aacgcaactctgcggcacaagatgcatatgggctccgagtcagagtccgtaaacgggccc
gggcgtgacagtggcctcccgtcctcgtctcggcatgacccctcggccacgctgcccggg
agagggggcgccgagccaggcgtcgacaccacagagggcatgctgaaccgcaagcatgag
atggagtcccacaacaagaaggccgccagcagatcctggcagaacgtgtactgtgtgctg
aggaagggaagcctgggcttctacaaggacaacaagagcgccagcaatgggatcccctac
cacggtgaggtgcccatcagcctgggagaggccacctgcgttatcgccaacgactacaag
aagaggaaacacgtcttcaaactccggctaggagatggcaaggagttcctgttccaagcc
aaggacgagcctgagatgagctcatggatccgggccatccactcgtccatgcagcctgcc
gccgccgaatactcgcccgggcctaaccgcggcctgagtcgggcaatgaccatgcctccc
atctctcccagttctggggacaccggcggggtcactatgcgcaacaaggatggcaaggat
aaagaccgcgagaaacgcttcagcttcttcgggaagaagaaataa
DBGET
integrated database retrieval system
