KEGG   Clupea harengus (Atlantic herring): 105913349
Entry
105913349         CDS       T09045                                 
Name
(RefSeq) TNF receptor-associated factor 6-like
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04010  MAPK signaling pathway
char04120  Ubiquitin mediated proteolysis
char04140  Autophagy - animal
char04144  Endocytosis
char04620  Toll-like receptor signaling pathway
char04621  NOD-like receptor signaling pathway
char04622  RIG-I-like receptor signaling pathway
char05132  Salmonella infection
char05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105913349
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    105913349
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    105913349
   04140 Autophagy - animal
    105913349
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    105913349
   04621 NOD-like receptor signaling pathway
    105913349
   04622 RIG-I-like receptor signaling pathway
    105913349
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    105913349
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    105913349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:char04131]
    105913349
   04121 Ubiquitin system [BR:char04121]
    105913349
Enzymes [BR:char01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105913349
Membrane trafficking [BR:char04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    105913349
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    105913349
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF CAGE1 SlyX Trimer_CC
Other DBs
NCBI-GeneID: 105913349
NCBI-ProteinID: XP_031420939
UniProt: A0A6P8F790
LinkDB
Position
3:23352779..23356563
AA seq 328 aa
MEMYICEEKQFHDELCPSASVVCGFCSAELIRDHLASHCDTDCPEVLVTCPFSSFGCEEE
KMSHSSLAQHMQEFTHYHLNSMAAFLRHQSLYGDPSIVDSKDVAARSSAATSEMDTSSRG
TMNLLELRHMRETVQQLEGRLVRQDHRLRKLSIQSHGQAVQLPDLHRQTAALEDAVQELK
AQQCDGVFTWHVEGFPEHLKSHRASQPVVLYSPGFYTGRPGYKLCLRLQLQPPTATRSPD
FLSLFVHAMHGAFDNQMAWPLQGTFKLTILNPNEGQHIMEVMETNPGLLAFQCPTSDRSL
KGFGYVAFVHLSKLCKRYMADNVLRVCC
NT seq 987 nt   +upstreamnt  +downstreamnt
atggagatgtacatctgtgaggagaaacagtttcatgatgagctgtgcccttccgctagt
gtggtgtgtgggttctgtagtgcagagctcattcgtgaccatttggcttctcactgtgac
acagactgtcctgaagttcttgtcacctgccctttcagttcctttggatgtgaggaggaa
aagatgtcacacagctcccttgcccaacacatgcaagaattcacccactatcacttgaat
tccatggctgcctttctcaggcaccagagcctgtatggagatccatccatagttgactcc
aaggatgtggccgcaaggagttctgctgccacgtctgaaatggatactagctcgagaggc
acgatgaacctcttggagctgcgacacatgcgtgagactgtgcaacagctggagggtcgc
ctggtgaggcaggaccaccggctccgtaagctgagcatccagtcgcacggccaggcagtg
cagctaccggacttgcacagacagacagctgctctggaggatgctgtgcaggagctgaag
gcccagcagtgcgacggtgtcttcacgtggcacgtggaaggctttccagagcacctgaag
agccacagagccagtcagcctgtggtcctgtacagtccaggtttctacacaggccggccc
ggctacaagctctgcctgaggctgcagctgcagccgcccactgccacgcgcagccccgac
ttcctctccttgtttgtgcacgccatgcatggggcttttgacaatcagatggcctggccc
ctccaaggcaccttcaagctgaccatactgaatccaaatgagggtcagcatattatggaa
gtaatggagaccaacccaggcctgcttgcatttcagtgccctactagtgatcgcagcctg
aagggctttggttacgtcgcttttgtgcacctgagcaagctgtgcaagaggtatatggca
gacaatgtcctgcgagtgtgttgttag

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