KEGG   PATHWAY: cjo03050
Entry
cjo03050                    Pathway                                
Name
Proteasome - Coturnix japonica (Japanese quail)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cjo03050  Proteasome
cjo03050

Other DBs
GO: 0000502
Organism
Coturnix japonica (Japanese quail) [GN:cjo]
Gene
107307294  [KO:K03031]
107307299  [KO:K03063]
107307425  PSMB5; LOW QUALITY PROTEIN: proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
107307631  [KO:K03063]
107308291  POMP; proteasome maturation protein isoform X1 [KO:K11599]
107309129  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
107309823  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
107310263  IFNG; interferon gamma [KO:K04687]
107310777  PSME4; proteasome activator complex subunit 4 isoform X1 [KO:K06699]
107311435  PSMB1; LOW QUALITY PROTEIN: proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
107314281  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
107314634  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
107314800  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
107315053  PSMA6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
107315228  PSMC1; 26S proteasome regulatory subunit 4 isoform X1 [KO:K03062]
107315394  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
107315507  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
107316984  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
107318168  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
107318228  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
107318568  PSMA4; proteasome subunit alpha type-4 isoform X1 [KO:K02728] [EC:3.4.25.1]
107319464  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
107319891  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
107321277  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
107321938  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
107321986  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
107322937  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
107322967  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
107323161  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
107323843  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
107324565  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
107324570  PSMB4; LOW QUALITY PROTEIN: proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
107324750  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
107324868  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
107325034  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
107325047  PSMC5; 26S proteasome regulatory subunit 8 [KO:K03066]
107325158  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
107325260  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
107325308  PSME3; proteasome activator complex subunit 3 [KO:K06698]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
cjo04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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