KEGG   PATHWAY: cjo04120
Entry
cjo04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Coturnix japonica (Japanese quail)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cjo04120  Ubiquitin mediated proteolysis
cjo04120

Other DBs
GO: 0016567
Organism
Coturnix japonica (Japanese quail) [GN:cjo]
Gene
107305747  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
107305844  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
107305962  FBXO4; F-box only protein 4 [KO:K10291]
107306009  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
107306014  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
107306306  CUL4A; cullin-4A [KO:K10609]
107306410  CDC16; cell division cycle protein 16 homolog [KO:K03353]
107306825  [KO:K07868]
107307215  ELOB; elongin-B [KO:K03873]
107307383  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
107307497  UBE3A; ubiquitin-protein ligase E3A isoform X3 [KO:K10587] [EC:2.3.2.26]
107307576  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
107307797  [KO:K10684] [EC:6.2.1.45]
107307842  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
107308370  CUL5; cullin-5 [KO:K10612]
107308397  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
107308546  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
107308572  [KO:K10260]
107308751  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
107308915  CUL2; cullin-2 isoform X1 [KO:K03870]
107309289  [KO:K20217] [EC:2.3.2.23]
107309305  [KO:K20217] [EC:2.3.2.23]
107309502  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
107309710  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
107309836  CUL1; cullin-1 [KO:K03347]
107310283  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
107310286  ELOC; elongin-C [KO:K03872]
107310303  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
107310413  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
107310502  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
107310504  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
107310726  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
107310812  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
107310826  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
107311278  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
107311526  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
107311567  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
107311963  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
107312597  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
107312907  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
107312915  CUL4B; cullin-4B [KO:K10609]
107312930  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
107312953  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
107313145  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
107313189  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
107313202  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
107313233  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
107313469  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
107313668  UBE2D3; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
107313827  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
107313933  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
107314089  UBOX5; RING finger protein 37 [KO:K10600]
107314175  PRPF19; LOW QUALITY PROTEIN: pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
107314196  DDB1; DNA damage-binding protein 1 [KO:K10610]
107314453  [KO:K04552] [EC:2.3.2.23]
107314700  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
107314743  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
107315637  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
107315681  RHOBTB1; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 1 [KO:K07868]
107315743  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
107315752  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
107316011  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
107316475  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
107316638  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
107317277  COP1; E3 ubiquitin-protein ligase COP1 isoform X2 [KO:K10143] [EC:2.3.2.27]
107317405  CDC20; cell division cycle protein 20 homolog [KO:K03363]
107317859  [KO:K10603]
107317968  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
107317975  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
107318020  CUL3; cullin-3 [KO:K03869]
107318062  TRIP12; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
107318089  RNF7; RING-box protein 2 isoform X2 [KO:K10611]
107318463  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
107318538  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
107318588  [KO:K10054] [EC:2.3.2.-]
107318590  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
107318678  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
107318800  DET1; DET1 homolog isoform X1 [KO:K10571]
107318947  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
107319235  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
107319291  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
107319450  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X2 [KO:K05630] [EC:2.3.2.26]
107319855  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
107320046  CDC23; cell division cycle protein 23 homolog [KO:K03355]
107320209  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
107320220  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10573] [EC:2.3.2.23]
107320414  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
107320428  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
107320592  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
107320726  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
107320828  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
107320902  STUB1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
107320977  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
107321036  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
107321050  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
107321076  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
107321116  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
107321129  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
107321292  UBE3B; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
107321378  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
107321500  UBB; polyubiquitin-B [KO:K04551]
107321604  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
107321609  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
107321650  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
107322010  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X2 [KO:K04678] [EC:2.3.2.26]
107322118  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
107322162  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
107322171  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
107322507  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
107322515  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
107322843  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
107322907  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
107323171  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
107323396  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
107323528  FBXO2; F-box only protein 2 [KO:K10099]
107323533  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
107323673  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
107324136  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
107324207  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
107324484  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
107325088  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
107325192  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
107325322  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
107325527  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
107325552  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
107325558  FZR1; fizzy-related protein homolog [KO:K03364]
107325632  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
107325797  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
107325919  PIAS2; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
107325935  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X4 [KO:K13305] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
cjo03050  Proteasome
KO pathway
ko04120   

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