Caproicibacterium lactatifermentans: GJQ69_04895
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Entry
GJQ69_04895 CDS
T07898
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
clf
Caproicibacterium lactatifermentans
Pathway
clf03030
DNA replication
clf03410
Base excision repair
clf03420
Nucleotide excision repair
clf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GJQ69_04895 (ligA)
03410 Base excision repair
GJQ69_04895 (ligA)
03420 Nucleotide excision repair
GJQ69_04895 (ligA)
03430 Mismatch repair
GJQ69_04895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clf03032
]
GJQ69_04895 (ligA)
03400 DNA repair and recombination proteins [BR:
clf03400
]
GJQ69_04895 (ligA)
Enzymes [BR:
clf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GJQ69_04895 (ligA)
DNA replication proteins [BR:
clf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GJQ69_04895 (ligA)
DNA repair and recombination proteins [BR:
clf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GJQ69_04895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GJQ69_04895 (ligA)
MMR (mismatch excision repair)
DNA ligase
GJQ69_04895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GJQ69_04895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
RNA_ligase
Auto_anti-p27
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QKN23873
UniProt:
A0A859DUD5
LinkDB
All DBs
Position
1010702..1012684
Genome browser
AA seq
660 aa
AA seq
DB search
MQQEEARKKVVELRKQIRYHNHKYYVEDAPDIDDYTYDILYRQLQNLEAAFPELRTPDSP
TQQVGGAALPQFSKVHHQVVMESLHDSFSHAELQEFDRRVRDEVSPVTYVVEPKFDGLSV
SLEYRDGIFVRGSTRGDGTVGEDVTENLRTIRTIPKTLTQPIPYLEVRGEVYMSHDSFFK
LCAQQELTGEKPFKNPRNAAAGSLRQKNSQITAARVLDIFVFNVQQITGKTLSHHDEALD
YLKQLGFTVSPFYKICHTIEEAIDAVEKVGSVRGSLGYSIDGAVIKVNDFAQRQELGSTA
KFPKWAEAFKYPPEEKQTKLLNIEVNVGRTGVLTPTGVFEPVALAGTTVSRATLHNQDYI
TDKDIRIGDMVTLRKAGEIIPEVVSVVSHAPDSEPYRLPAVCPSCGSPVVREPGEAAVRC
TNAACPAQLSRHLIHFVSRDAMNIDSCGPAVIEQLISKELVHSPVDLYSLTLAQLTSIER
MGEKSAQNLLDGIEKSKQNDLSHLLFAMGIPHIGQKAAKLLAARFGSMSALFQADTADVA
SIDGFGDIMAKSVTEFFSLSATAELVGHLRDAGVNMESALRVSEDNRFAGKTFVLTGTLP
DLTRVEASALIEKYGGKVTGSVSKKTSYVLAGEEAGSKLTKAQKLGVPVLSQNDFQKMLS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagaagaggccagaaaaaaggttgtagagctgcggaaacaaattcggtatcat
aaccacaaatattatgtggaagatgcgccggatatcgacgactatacttatgatatactg
tatcggcagctgcagaatttagaggcggcatttccggagctgcgtacaccagattcgcct
acccagcaggtgggcggtgctgcactgccgcagttcagcaaagtgcatcatcaggtcgtt
atggaaagtctacacgattctttttctcatgcggagctgcaggagtttgaccgccgtgtg
cgtgacgaggtttctccggttacctacgttgtggaaccaaaatttgacgggttgtcggtg
tcgctggaataccgtgacggcatttttgtgcgcggttccacgcgcggtgacggaaccgtt
ggtgaagatgtgacggaaaatctgcgtactattcggaccatccccaaaacattgacacag
ccgattccgtatctggaagtacgtggggaagtgtatatgtcacatgacagctttttcaag
ttgtgcgcacagcaggagctgaccggcgaaaagccctttaaaaacccgcgtaacgccgcc
gcgggctcccttcgtcaaaagaacagtcaaattacagcggcgcgtgtactggacattttt
gtattcaatgtacagcagattacaggaaaaacactgtcccaccacgatgaggcgctagat
tatttaaagcagctgggctttacggtttcaccgttctataaaatctgtcatacaatcgaa
gaagcaattgatgcggtggaaaaggttggaagtgtgcgcggtagccttggttactctata
gacggtgccgttatcaaggtcaacgactttgcgcagcggcaggaacttggcagcactgca
aaatttccaaagtgggcagaggcatttaagtatccgccggaggaaaaacagacaaagctg
ctaaatattgaagtgaatgtcggccggaccggtgtcttaacgcccaccggtgtttttgaa
ccggttgcgttggccggtaccaccgtcagccgtgcgacactgcacaatcaagattatatt
acagacaaagatatccgtattggggatatggtcacactgcggaaagcaggggaaatcata
ccggaagttgtcagcgttgtttcccatgcgcctgactcggaaccatatcgtctgcctgcg
gtgtgtccttcctgcggcagtccagttgttcgggaaccgggtgaggcagcggtccgctgt
acaaatgccgcctgtccagcacagctctcccgccatctgattcactttgtcagccgggac
gccatgaatattgacagctgtggtccagccgtcattgaacagttgatttccaaagaattg
gtgcattctccagtggacctgtactctcttacgctagcacagctgaccagtattgagcgc
atgggggagaagtcagcgcaaaacttgctggatggcattgaaaagagcaaacaaaacgac
ctttcccacctgctttttgcgatgggcattccgcacatcggacaaaaagcggcaaagctg
ctggcagcccgatttggcagtatgtccgctctattccaggcagataccgcagacgttgct
tctattgacggttttggcgatatcatggcgaaaagcgtaacggaattctttagtctttcc
gctaccgctgaactggttggtcatttgcgggacgccggtgtcaacatggaaagtgcactg
cgggtatcggaagacaaccgctttgctggaaaaacgtttgtccttaccggtacgctgccg
gatttgacccgtgtggaagcttctgcactgattgaaaaatatggcggcaaagtaaccggc
agtgtgagcaaaaagacaagctatgttcttgcaggggaggaagctggcagcaagcttaca
aaggcacaaaaactgggtgttccggttctgtcacagaacgatttccagaaaatgctttcc
taa
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