Dellaglioa kimchii: ACE83Q_07415
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Entry
ACE83Q_07415 CDS
T11222
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dki Dellaglioa kimchii
Pathway
dki03030
DNA replication
dki03410
Base excision repair
dki03420
Nucleotide excision repair
dki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACE83Q_07415 (ligA)
03410 Base excision repair
ACE83Q_07415 (ligA)
03420 Nucleotide excision repair
ACE83Q_07415 (ligA)
03430 Mismatch repair
ACE83Q_07415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dki03032
]
ACE83Q_07415 (ligA)
03400 DNA repair and recombination proteins [BR:
dki03400
]
ACE83Q_07415 (ligA)
Enzymes [BR:
dki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACE83Q_07415 (ligA)
DNA replication proteins [BR:
dki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACE83Q_07415 (ligA)
DNA repair and recombination proteins [BR:
dki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACE83Q_07415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACE83Q_07415 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACE83Q_07415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACE83Q_07415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
MafB19-deam
Motif
Other DBs
NCBI-ProteinID:
XLP64256
LinkDB
All DBs
Position
1496045..1498075
Genome browser
AA seq
676 aa
AA seq
DB search
MTLEEATKRVNQLKTDLIKWTRQYYVLDQPTVEDHVYDEHYLQLVELEKVFPNLVTPNSP
TQRVGGQVLPGFEKVSHEVPMLSLGDVFSIEELSEFDQRLQKSVDAEVSYNAELKIDGLA
ISLTYENGVFVKGSTRGDGTIGEDITENLKTVKSIPLTLTEPISIEVRGECYMPTKAFVA
LNKRREEAGETVFANPRNAAAGSLRQLNTAETAQRQLSTFIYYIVDPNALDVKTQSDALK
RLAELGFRTNTESRVTSDMTEISAYINEYQAKRHDLSYDIDGIVIKANLFTIHDEVGNTV
KVPKWAIAYKFPPDEQETKVLDIEWTIGRTGVVTPTAIMNPVQLAGTTVSRASLHNGDLL
KQKDIRINDMVKLHKAGDIIPEISEVVLDKRPDDSVVYILPTNCPVCGALLVHLDEEVAL
RCINPKCPALIKESLAHFASRNAMNIDGLGPKIVEQLFENKLISDVAGLYQLTADQLLTL
DNFKEKSVNKLLNAIDISRQNSVERLLFGLGIRHVGAKAARLVSAEFKDIHQLMTATAED
ILVIDSIGQVIADSLVTYFANDQVRELIDELDNAQVNLTFLGKTTAEIAELAEGSPVMDK
KVVLTGTLDQLKRSDAKKWLEANGASVVGSVSKKTDLLIAGHDAGSKLIKAEQLEIEIWD
EQQFISVMEGVSYEKN
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ataacgttggaagaagcaactaaaagagtgaatcaattaaaaactgacttaatcaaatgg
acgcgtcaatattatgtccttgatcagccaacagttgaagatcatgtttatgatgaacat
tatcttcaactagtagaacttgaaaaagtctttcctaatttagtgacacctaattcacca
acacaacgtgttggtggccaggtactgcctggttttgaaaaagtttcgcatgaagtacca
atgctatcattgggagatgtcttttcaattgaagagctatctgaatttgatcaacgatta
caaaaatcagttgatgctgaggtgagttacaatgctgaactcaaaattgatggattggct
atttcgttaacgtatgaaaatggtgtattcgttaaaggatcaactcgtggagatggcaca
attggtgaagatattactgagaatcttaaaacagttaaatcgattccattaacattgacg
gaaccaatttcaattgaagttcgtggtgaatgttacatgccaacaaaggcgtttgttgcg
ttgaataaacgtcgcgaggaagctggggaaacagtatttgctaatcctagaaatgccgca
gcaggtagtttacgacaattgaatacagctgaaacagctcaacgacaattgagtacgttt
atctattatattgttgatccgaatgcattggacgtcaaaactcaaagtgatgcgttaaaa
cgcttggctgaacttggatttagaacaaatactgaatcacgtgttacgagtgatatgaca
gaaatttcggcatacattaatgaatatcaagcaaaacgtcatgatttatcttacgatatt
gatggaattgttattaaagcaaatttattcacgattcatgatgaagttggtaatacggtt
aaagttccaaaatgggcaattgcctataaatttccaccagacgagcaagaaacaaaagtt
ctagatattgaatggacgattggtcgaacaggtgtcgtaacacctactgcaatcatgaat
cctgtgcagttagcagggacaacagtttctcgggcgtcattgcataatggagatttactg
aaacaaaaggatattagaattaacgatatggttaagttgcataaggcaggggatattatt
ccagaaatttctgaagttgtcttagataaacggccagacgacagtgttgtgtatatttta
ccaacgaactgcccagtttgtggggcattattagttcatctagatgaagaagttgcatta
cgttgtatcaatccaaaatgtcccgcactcattaaagagagtctggcacattttgcttct
cgaaatgcgatgaatattgatggactaggtcctaaaattgttgaacaattatttgaaaat
aagttaattagtgatgtagcaggattgtatcagttaactgctgatcaactgttaactcta
gataatttcaaagaaaaatcagttaataaattattaaatgcaattgatattagccgacaa
aattcagttgaacgcttattatttggactaggaattcggcatgttggtgctaaggcggct
cgattggtttcagccgaatttaaagatattcatcaattaatgacagcaactgctgaagat
attctcgtcattgattcaatcggacaggtgattgcggatagtcttgtgacttattttgcg
aatgatcaagttcgtgaattgattgacgaacttgataacgctcaagtcaacttaaccttt
ttaggcaaaacaactgctgaaattgcagaattagctgaaggtagccccgtgatggataag
aaagttgtcctaacgggaacgcttgatcagttgaaacgaagcgatgctaaaaaatggctt
gaagcaaatggtgcttctgttgttggtagtgtttcgaaaaaaacagacctattaattgcc
gggcatgatgctggaagtaagttaataaaagctgagcaactagaaattgaaatttgggat
gagcaacaatttatctcagttatggaaggagtgtcatatgaaaaaaattaa
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