KEGG   PATHWAY: dle03030
Entry
dle03030                    Pathway                                
Name
DNA replication - Delphinapterus leucas (beluga whale)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
dle03030  DNA replication
dle03030

Organism
Delphinapterus leucas (beluga whale) [GN:dle]
Gene
111163345  RPA2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
111165627  PCNA; proliferating cell nuclear antigen [KO:K04802]
111165805  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
111166613  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
111167547  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
111167995  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
111168835  MCM2; DNA replication licensing factor MCM2 isoform X2 [KO:K02540] [EC:5.6.2.3]
111169119  POLE4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
111170556  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
111171144  [KO:K02684] [EC:2.7.7.102]
111172714  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
111172856  RFC4; replication factor C subunit 4 [KO:K10755]
111173187  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
111175227  RFC3; replication factor C subunit 3 [KO:K10756]
111175291  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
111177300  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
111177543  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
111178250  RPA4; LOW QUALITY PROTEIN: replication protein A 30 kDa subunit [KO:K10741]
111178643  PRIM2; DNA primase large subunit isoform X1 [KO:K02685]
111178909  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
111180676  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
111181058  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
111181480  RPA3; replication protein A 14 kDa subunit isoform X1 [KO:K10740]
111181940  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
111182052  RFC2; replication factor C subunit 2 [KO:K10755]
111183441  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
111183680  [KO:K03505]
111183682  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
111183744  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
111183765  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
111183886  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
111184511  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
111184858  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
111185703  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
111186841  RFC5; replication factor C subunit 5 [KO:K10756]
111186982  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
111187877  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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