Danio rerio (zebrafish): 100535720
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Entry
100535720 CDS
T01004
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100535720 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
100535720 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
100535720 (lsm3)
03041 Spliceosome [BR:
dre03041
]
100535720 (lsm3)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100535720 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
100535720 (lsm3)
Spliceosome [BR:
dre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100535720 (lsm3)
Complex C
U2 snRNP components
100535720 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
100535720
NCBI-ProteinID:
NP_001373759
ZFIN:
ZDB-GENE-161207-2
Ensembl:
ENSDARG00000089663
UniProt:
E7EZE6
LinkDB
All DBs
Position
22:complement(33564760..33575234)
Genome browser
AA seq
102 aa
AA seq
DB search
MADDAEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgctgagcagcaacagaccaccaacaccgtagaagagcctctggatctg
attcggctcagtctggatgagaggatctatgtaaagatgaggaatgacagagaactgcgt
ggcagactgcatgcctatgaccagcacttaaacatgatcctcggagatgttgaagagaca
gtgacgactgtggaaatcgacgaggagacatatgaggagatttataagtcgacgaagcga
aatattcccatgctgtttgttcgaggggatggagtggtgttggtggcgccgccgctccga
gttggataa
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integrated database retrieval system
