Danio rerio (zebrafish): 100536129
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Entry
100536129 CDS
T01004
Symbol
kdm2bb
Name
(RefSeq) lysine (K)-specific demethylase 2Bb
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
100536129 (kdm2bb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
100536129 (kdm2bb)
04121 Ubiquitin system [BR:
dre04121
]
100536129 (kdm2bb)
03036 Chromosome and associated proteins [BR:
dre03036
]
100536129 (kdm2bb)
Enzymes [BR:
dre01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
100536129 (kdm2bb)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
100536129 (kdm2bb)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100536129 (kdm2bb)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100536129 (kdm2bb)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
100536129 (kdm2bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
100536129
NCBI-ProteinID:
NP_001410477
ZFIN:
ZDB-GENE-080225-13
Ensembl:
ENSDARG00000046010
UniProt:
F6P9Q3
LinkDB
All DBs
Position
10:complement(47050687..47136014)
Genome browser
AA seq
1260 aa
AA seq
DB search
MEACAESGRKLRSICRRMYDENEDLSDVEEITNVRGFSLEDKLDSASYNSQLVQFMEGKD
FTYEYVQREALRTPLVFKAKDGLGIRMPDPEFTVSEIKGLVGSRRPVDVMDVSTQKGSEM
SMAQFVRYYETPEDERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPRHLKQKQ
TEATNVMSEMKYPKVQRYCLMSVKGCFTDFHIDFGGTSVWYHVFKGQKVFWLIPPNAHNL
SLYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLTVYEIENRTKVHSKFRYPFFYEMCWYVLERYVSCLTKRSHLSLEFRNHTAEP
KPVTESLMSATRLDMEEDSCGTEGTILSSFSIPPCQTFKPSANDSEDSSKSLPSECPKTP
SGSPGMDHSGKWSHLTEFELNGLKALVEKLESLPENKKCVPEGIEDPQALLDDVKVVLKE
HADDNPKLAISGSPIVCWPKKTFKPRPLNRPKPKMGSSPCAAPGSTAGGMKLSSGRGSSS
ARRRRTRCRKCEACTRKECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVC
GEAGKEDTVEGEDDKFSMMLMECSICSEIIHPACLKDKDAGGVVNDELPNCWECPKCNHA
GKTGKQKRGPGFKYASNLPGSLLKEQRTLIKEEPDMSTETTAVSPITKRKTEHEDNPTCK
SEDALKKRSPKLEDNPLRKKRKLFEKDSDSNSIIRKKKKRTNPDDLSTSLILGHIKKERE
DDEEYEEQNQPERSFVPSEEEDGDDERDEEEEEKALSSRKENGKVSHKTLESDQSQGGLT
QAGPSSTDAQSKSQRKPKRKPRLPNKELSKELSKQLNQEIQKTEDRLAHQNGRTVKTEPS
SDGEDRKPLNNGSSHLRDWLGPKWELNGSLREQTPVSLIRTTTPAPVFRPTPCRSPPKCV
QMERHVIRPPPISPPPDRLPLDDGKNHVLRREVWMGVFSHLIHKDLCVCMSVCKTWNRWC
CDKRLWTKIDLNRCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLLL
AGCSWAAVSALCTSSCPLLRNLDVQWVEGLKDNQIRDLLSPPTDNRPGQLDCRSKLRNVE
DLCLAGLDITDTSLKLIIKHMPLLSQLDLSYCNHITDQSVNILTAAGTTTRDSLTHINLS
VCNRVTDLSLTYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFRLMEEKLLSKLS
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgtgcgcagaatccggacgcaaactgcgctcgatctgccggaggatgtacgat
gagaatgaggatctgtcagatgtggaggagatcaccaacgtcaggggcttcagtctggag
gacaaactggacagcgcgtcatacaacagccagctagtgcagttcatggaggggaaagat
ttcacctatgaatatgttcagagagaagcgctgcggaccccgcttgtgtttaaagccaaa
gatggactgggaataaggatgccggatccagaattcactgtgagtgaaatcaagggtttg
gttggcagcagacggccggtggatgtgatggacgtcagcacacagaagggttcagagatg
agtatggctcagttcgtccgctactacgagactcccgaagacgagcgcgataaattgttc
aacgtcatcagtctggagttcagccacaccaaactggagaacctgatcaagagacctaca
gtggtggatctggtggattgggtggacaacatgtggccgcggcatcttaaacagaaacaa
accgaagccacgaacgtcatgtctgagatgaaatatcccaaagttcagagatactgtctg
atgagtgtgaaaggctgcttcactgacttccacatcgactttggcggcacatcggtttgg
tatcatgtcttcaaaggacagaaggtcttctggctgattcctccaaatgcacacaacctg
tctctgtatgaggactgggttttgtcaggcaaacagagcgacatctttctgggtgaccga
gcagacggatgccagagagtcgagctgaagcagggatacaccttcttcatcccatcaggc
tggattcatgccgtctacactccagaggacaccctggtgtttggcgggaatattctccac
agttttaacattcccatgcagctcactgtctacgaaattgagaacagaacaaaggtgcac
tccaaattccgctacccgttcttctatgagatgtgctggtatgtgctggagagatacgtc
agctgcttgaccaaacgttcgcatctcagcctcgagtttcgcaatcacactgctgaacca
aagccagtgactgagagtctcatgtctgctactcggctggacatggaggaggactcgtgt
gggacagaggggacgattctgtcctctttttccatcccgccctgtcagacatttaaaccg
tcggccaatgattcagaagacagctccaaatcccttccttcagagtgtcccaaaacgccg
tccggctccccgggaatggatcactcgggaaaatggagccacctgacagagtttgagctg
aacggactcaaggctttagtggagaaactcgaatctcttccggaaaataagaaatgcgtc
cctgagggcatcgaggatccacaagcactgctggatgacgtcaaggttgtcttgaaggaa
catgcagatgacaaccccaagctggccatcagcggttccccaatcgtttgctggccaaag
aagacattcaagccgcggccgctcaatcgtccaaaacccaagatgggctcgtctccatgc
gctgccccaggctcgacagcaggaggaatgaagctctcgtcgggtcgtgggtcatcgagt
gcccggcgcagacggacacgatgccggaagtgtgaggcatgtacaaggaaagagtgtgga
gagtgccacttctgcaaggacatgaagaagtttggtggaccgggccgcatgaagcagtcc
tgcatcatgagacagtgcatagcgcctgttttacctcacactgctgtgtgtgtggtgtgc
ggagaggctgggaaagaagacacggtagagggtgaagatgacaaattcagcatgatgtta
atggagtgctccatttgcagtgaaatcatccatccagcatgcttgaaggataaggatgct
ggtggtgttgtgaatgacgagttaccaaattgctgggagtgtccgaaatgcaatcatgct
ggaaagacagggaaacaaaaaagaggcccagggtttaaatacgcctccaatctccctgga
tctctgctcaaagagcagcgaacaatcataaaggaagaaccggacatgtcaacagagacc
gctgctgtttcacccatcacgaagaggaagacggaagatgacgacaacccaacctgcaag
tcagaagacgcaataaagaaacgttcccccaaactggaggacaacccgcttcgcaagaag
agaaaactcttcgaaaaggactcagactccaattccatcatcaggaaaaagaagaagcgc
accaatcctgatgatctctcaacctctttgatcctgggacacatcaagaaggaaagagag
gacgatgaggagtacgaggagcaaaaccaaccagaaagaagctttgtgccctcagaggaa
gaggatggtgatgatgaaagagatgaagaggaagaagaaaaagcgttaagtagccgaaaa
gaaaacgggaaagtttcacataagacattggaaagtgaccaatcacagggcggattaacc
caggcgggtccctctagcactgacgcacagtcaaaaagccagcgaaaagccaaacgtaaa
cctcgactgcccaataaagaactgagtaaagagctgagcaaacaactgaaccaggagatc
caaaagactgaggatcgcctggcacatcagaatggcaggacggttaagactgaacccagt
agtgacggagaggacagaaaaccactgaataatggcagcagtcatcttcgggattggctg
gggcctaaatgggagctaaacggatcgttgcgagagcagacaccggtgagtttgattagg
accaccacgcctgcccctgtcttccggcccacaccttgtcgatctccgcccaaatgtgtc
cagatggagcgccatgttatccgtccacctccaatcagccccccgccagaccgactacct
ctggatgatgggaagaaccatgtcctgcggagggaggtgtggatgggagtcttcagccac
ctcatccacaaagacctgtgtgtctgtatgagtgtctgcaagacttggaacagatggtgt
tgtgataaaagactgtggacaaagatcgatctgaaccggtgcaagtcgatcactccgctc
atgctcagcgggattatccgcaggcagcccgtctccctggacctaagctggaccaacatt
tccaagaagcagctcagctggctgatcaacagattacctggtctgcgggttctactgttg
gcgggctgctcgtgggccgcagtttctgctttatgcacatccagttgtcctttattaaga
aatctagatgtacagtgggtagaaggactcaaggacaaccagataagagatttactctct
ccaccgacagacaacagaccaggtcagctggattgcagaagtaagctgaggaatgtggag
gatctctgtctagccggtctggacatcacagacacgtcgctgaagctgatcataaaacac
atgcctttactttcccaactggacctcagttactgtaatcacatcacagaccatagcgtc
aacatcctcacggcagccggcaccaccaccagagactcactcacacacatcaacctgtca
gtgtgtaatagagttacagacctgtcgttgacctacttcaagcgctgcggaaacatctgt
cagatcgacctgcggtactgcaagcaagtcaccaaggagggctgtgagcagttcatcgca
gagatgtctgtcagcgtgcagttcagactgatggaagaaaaactactgagcaaactgagc
tag
DBGET
integrated database retrieval system
