Danio rerio (zebrafish): 393480
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Entry
393480 CDS
T01004
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
393480 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
393480 (eftud2)
Spliceosome [BR:
dre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
393480 (eftud2)
Complex C
U5 SnRNP specific factors
393480 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
393480
NCBI-ProteinID:
NP_956802
ZFIN:
ZDB-GENE-040426-1569
Ensembl:
ENSDARG00000012261
UniProt:
A8WFS1
LinkDB
All DBs
Position
3:complement(15062195..15086849)
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AA seq
973 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEELDAEDRDADEADEEGDDDDQAEADEDGGGGGMEVVL
HEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRMKQFTLMEQELPATVYDMEFL
ADLMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDEDLRYTDILFTEQERGV
GIKSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSAVRLSDGIVLFIDAAEGVMLNT
ERLIKHAVQERLAITICINKIDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDESLI
VSPLLGNVCFASSQYCICFTLGSFAKIYSDTYGDISYMEFAKRLWGDIYFNPKTRKFTKK
APNSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIKPLLRLV
CNRFFGEFTGLVDMCVQHIPSPQGGARAKIEHTYTGGLDSDLGETMSECDPDGPLMCHTT
KMYSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYSLEDEEDSQICTVGRLWISVARYQI
EVNRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSE
LPKMLDGLRKVNKSYPSLTTKVEESGEHVILGIGELYLDCVMHDLRKMYSEIDIKVADPV
VTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQ
TKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPL
CDEPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAP
ADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALS
VFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLL
ELAKQDVMLNYPM
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggagactgatctttatgacgagtttggaaattatatcggaccagagctggactctgat
gaggatgaagagctagatgcagaggaccgggatgctgatgaggcggatgaggaggatgac
gatgatgaccaggctgaggctgatgaggatggaggaggtggtggtatggaggtggttctg
catgaggataaaaagtattatcccactgctgaagaagtgtatggtcctgaggtggaaact
attgttcaagaagaagatacacagccgctgacagagcccattataaaacctgtgaggatg
aagcagtttactctgatggagcaggagcttccagcgaccgtctatgacatggaattcctt
gctgatcttatggacagctcagaactgatcagaaatgtcacactgtgtggacacttacac
cacggcaagacatgttttgtagactgcctcattgaacagactcatcctgaaatccgtaag
agagatgacgaagatttacgatacacagatatccttttcactgagcaagagagaggggtt
ggcatcaagagtactcctgtaaccatggtgctgccggactcacggggcaaatcctacctc
ttcaacatcatggacacgccaggtcatgtgaatttctctgatgaagtgacatctgcagtt
agactatctgacgggattgtgctttttattgatgctgctgagggggtaatgctgaacact
gagcgactgatcaagcatgcagtgcaggagagattggccatcactatctgtattaataaa
atagatcgtctgattgtggagctcaaactgccccctactgatgcctactacaaattgcgc
cacattgtggatgaggtcaacggcttgctgagcacatattctacagatgagtctctgatt
gtgtcgcctctgttggggaacgtctgtttcgcttcctcgcagtactgcatttgctttact
ctcggctccttcgccaaaatctattcagacacctacggtgacattagctacatggagttc
gcaaaaagactatggggagacatttacttcaaccccaaaacgagaaagttcacaaagaaa
gcccccaacagcaactcccagcgcagctttgttgagtttgtgctggagccgctgtacaag
atcctttcacaggtggtgggtgatgtggatacgtctctgccgcgagtccttgacgaactt
ggcattcatctgaccaaagaggagttaaaactcaacatcaaacctctgctgcgcctcgtc
tgtaaccgcttttttggagagtttacaggcttagtggacatgtgtgtgcaacacatacca
tctcctcaggggggcgccagagcaaaaatagaacatacctacacgggtggactggactca
gacctcggagagaccatgtctgagtgtgaccctgatggtccactgatgtgccacaccact
aagatgtacagcacagatgacggcgttcagttccacgcgtttggtcgggtcctaagtgga
accctgcaggcaggtcagcccgtgaaggttctgggagaaaactacagtctggaggacgag
gaggattctcagatctgcactgtgggacgcctgtggatttctgtcgccaggtatcagatt
gaagtgaatcgagtccctgctggtaactgggtgttaattgagggctgtgaccagccgatt
gttaaaacagccacaatcacagagccccgtggaaatgaagaggcacagatcttcaggcca
ctcaagtttaacaccgcatcagttataaaaattgctgtggagcctgtcaatccttcagaa
ttgcccaagatgttggatggactccgaaaagttaacaaaagttatccttcactcacaaca
aaggtggaggagtcaggtgaacacgtgattcttggcacaggtgagctgtatctggactgt
gtaatgcacgacctgcggaaaatgtactctgaaattgatatcaaggtagctgatcctgtg
gtgaccttttgtgagactgtcgtggaaacttcttctttgaagtgttttgctgaaacgccc
aataaaaagaataaaatcaccatgattgctgagccattggagaagggtcttgctgaagac
attgagaacgaggtggtgcagatcacatggaacaggaaaaagttgggagagtttttccag
accaagtatgattgggatttgctggcagctcgttccatttgggcttttggaccagacaca
actggacccaacatcttagtagacgacactttgccatctgaggtggataaagctctcctt
ggctcagtgaaagacagtattgtacagggtttccagtggggaacacgcgagggtcctctg
tgtgacgaaccaatccgcaatgtgaagttcaagatcctggatgccgtgattgctcaggag
ccgctgcacagaggaggaggacaagtcatccctacagctcgcagagttgtctactccgct
ttcctcatggccacacccaggctaatggagccctattactttgtggaggttcaagcacct
gctgactgtgtttctgcagtttacacagtgttggcacgcagaagaggtcatgtgacgcag
gacgctccaatccctggctctcctctctacaccatcaaggctttcatccctgctattgac
tcattcggctttgaaacggatctacgcacacacacacagggccaggccttcgcgctcagt
gtgtttcaccactggcagattgtccccggtgatcctctggataagagcattgtgattcgt
cctttagagccccaaccggcccctcatctggccagagagtttatgatcaagacccgcagg
cgcaaaggcttgagcgaggatgtcagtatcagcaagttcttcgatgaccccatgttgttg
gagctcgccaaacaggacgtgatgctcaactacccaatgtga
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