Danio rerio (zebrafish): 497282
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Entry
497282 CDS
T01004
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
497282 (smchd1)
03400 DNA repair and recombination proteins [BR:
dre03400
]
497282 (smchd1)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
497282 (smchd1)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
497282 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
SelP_N
Bacillus_HBL
INTS7_C
Motif
Other DBs
NCBI-GeneID:
497282
NCBI-ProteinID:
XP_009301910
ZFIN:
ZDB-GENE-050211-6
Ensembl:
ENSDARG00000104374
UniProt:
A0A8M3AUP8
LinkDB
All DBs
Position
7:71586252..71661392
Genome browser
AA seq
1983 aa
AA seq
DB search
MENQLLTAGAGETQPEKKHQKSVVVYDCRPGSSAAPPRTFDISNADFTSFLQALVREFSL
SNDETFVISTTDRKEIDQELYKELVHGKTLQLMTSVNQELPVATQERIDYLPHYHTLVQC
GMYEYYASEGQKALPYAFAELIDNALSATRRNTDIRRIEIRLLFDEAQGGPAVVVMDNGC
GMTSKQLNNWAVYRLSKFIRENSTFQSEEAGYVQPDPVPRSLNSDISYFGVGGKQAVFYI
GQSVRMISKPASSPDVHEFIMSKDDFERKERNKEDIYSGFIRNRKPGDCSHVDKSEEMFL
QSIMREEIGKESFTAVVITGIQQEHINYLKQHFILWTRELAHTYHYYIHGVDGNVKNEMK
KTESSSNIDIQISLFERSTRVPRIINLREVDNDMQTLYVRSSANTFEFKATGAKDSLVEG
LIRYHPFLYDRETFPVDPYAASAEDEDEELEVLNPEGRGKRPIFECFWNGRLIPYTTVSE
FPWCERPKKGGIVPLECYNRISGVLFANDRFQVSTNKLTFMDLELQLRDKDTIFNNGQGQ
RVNIEKEFTNWLKTCHESFDKQVMFQGYISNVTRTDVATKRQFPWAGFEAIQWDGKTYKR
GQYVKTVKTKPILYGSILQFLLYGACDGDVYATGGFAQIALEPKELYDEKKVIPISKIDR
MATAKAIEENIENELAKLPDQLKITWPEGNAWEDKDAYPAGTPMGPIKVEILNRKGYSIS
RLPGTGNIKKLVVELTVTRQSPKKDDQTKKDVQTNSHIAVHSTKWEYWFKTMENLTKIGK
YTLHLQTKLSDSSESHWVGKKLPNYTLNFSIKEGKAESFKIGQVSSPVLVGVPFSVPLDF
RDQFEYSTQPPSGIKPQLECSSLKLSYDGIAFGTTAVINNVRALGKIKQQGKKHTVKVRI
PGLKQDIDSFQLALEPGPPHTLVVFPDGDVLSVENGTPVNFKVEVHDECQNITAHPKLAV
RCQMMGAPDLPVDIVDCSNTGSGLMLTKPLSLKTVNAEQIFTVKFNIPNHRTVSSVERQL
RVLPSTRISRIEVYRQEEGSDDVMVLQNSERIDWTAGDTLGNLYFRLYDEGNRLVSLQPK
ITSKIKVNWTAKLNAEDLAQGKLPCLGVPTQAQREHFYHVSFQDQHAVNMSFIIVPRPDE
PERLRVRLGESTVKMGEVLSGSTYVEVMDQYGNKTDRLDAESVNSLSVSADGLDNEALAV
EWQARAGHFCVSGIRFVSGSPGSRELSFQLQRMKEFVRVDVTAGAPAQIKLLEELEMPLQ
VMNGHGLETPLTMQLCDQWGNASPDQRVNIVLKTRTSQLKIKSSVSSQPVDSKGKACFVL
EAISGPKGEHELEFRGFFSRNGIPGPIIKLNLIPDPNKPVKLCVEYDSRVTLCAGDIFPD
FMVVVKSEEGSAVKNICPANLSMLLWKGTASGSCPPAAASTLKCSKRKDSEKDDSFCFRD
KQIPELAGQYVVQFVLALDQTKHLWSKQIPLNVFANKATKLAPEIPPATPVVSNSNVRAN
RTLLYSLTLKIMDQYSNVAGEGLDGQVVVTVTGTGDIVIPLFENKEKRRSYSLTNGETVI
TDLVLLENSPGVDGAEYVLQFSPEIQQTGVSIAPYSLPFRFCNDADHQKVIVTLSKKKDR
LSQTIKMFREFFDTNQQLISELECQVRDALHKLNEFKPELKRNGISALSTVSEIEDLINA
KKANLTKMENQPRRKCTVPDPFRGSPQVLGKVAHLALVKDDNVAKVISWHLLGDMDCVVT
ETTSAAKRIYDDTHGRQQVLPLETIFWKPYDKRLPHIRNGSALFRPLGDPVFVKDLLIFP
EYAESCNKVFTTLLGDTILIDDLDSANQYRRGVVQNKIQCPTILTRQGERIRCNGKFGGL
QNKAPSIEKLRGQVFGAPLPAEYNQTRLQIDLLQQYRVAMQKASTVQADLNSHLMDLQSP
IMTQKKQELEEQEVELQEIEKTLARTPEQMSDAVRVKRSLEPESSDTPVLPKRIRRKPLK
MDS
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccagctgttgaccgcgggcgctggagaaacgcagcccgaaaagaagcatcaa
aagtcggttgtggtgtatgactgtcggcccggcagcagcgctgctccaccgcggactttc
gacatctccaacgcagattttaccagcttcctgcaggctctcgttcgggagttctcgctg
tcgaatgatgagactttcgttattagcacgacagaccgaaaggaaatcgaccaagagctt
tacaaggagctggtgcacgggaaaaccttgcagctgatgacttctgtaaatcaggagctt
ccagtggcgactcaggagcggatcgactatctgccacactatcataccctggtgcaatgt
ggcatgtacgagtattacgccagcgaaggacagaaagcgttgccctatgcgtttgcagag
ctcattgataatgcactgtcagccaccaggagaaacactgacatcaggaggattgaaatc
agactgctgtttgatgaggctcagggaggacctgcggttgtggtgatggacaatggctgt
gggatgacctccaaacagctcaacaactgggctgtttaccgtctttccaagttcatccga
gaaaacagcacatttcaaagtgaagaagccggttatgtgcaaccagatccagttccacgc
agtctgaacagtgacatctcatattttggagtcggaggaaaacaggctgtgttttacatc
ggccagtctgtcaggatgatcagtaaacctgcgagctctccagatgtccatgaatttatc
atgtctaaagacgactttgagcgcaaggagagaaacaaggaagacatttattcgggcttt
attagaaacaggaagcccggagattgttcacatgtggacaaaagcgaggagatgtttctg
cagtccattatgagagaagaaattggaaaggagagttttacagcagtcgtcatcactggg
atacaacaggagcacatcaattatcttaaacagcatttcattctgtggaccagagagttg
gcacatacttaccattattatatacatggagtcgatggaaacgtcaaaaatgaaatgaaa
aaaactgaatcttcctccaacattgacattcagatcagtttgtttgagcgctcgactcga
gtcccccgtatcattaatctgcgggaggtggataacgacatgcagacactctatgtccgg
tcatctgctaacacgtttgagtttaaagccaccggagccaaagattcattagtggaggga
ttgatccgatatcatccttttctctacgatcgagaaactttccctgtggatccatacgct
gcttcagcagaggatgaagatgaagaattagaagttttaaatcctgaaggccgtggcaag
cgtcccatctttgagtgtttctggaacggccggctcattccctacaccacagtctcagag
ttcccgtggtgtgagaggcccaagaaaggtggcatcgtcccgctggagtgttataatcgt
atttcaggcgtcctctttgccaatgacagattccaggtcagcaccaacaaactcaccttc
atggatctggagctccagcttcgtgacaaagacaccatttttaacaacggccagggtcag
cgagtcaatattgagaaggagtttaccaactggttgaaaacatgtcatgagagctttgat
aagcaggtgatgtttcagggatatataagtaatgtgacgcgcacagacgtggccaccaaa
cgtcagtttccctgggctggatttgaagccattcaatgggatggcaaaacttacaagaga
ggacaatatgtcaagactgtgaaaactaagcccatcttgtatggctctatacttcagttc
ttgctttatggagcatgtgacggtgatgtttacgccactggaggatttgcccagattgca
ttggaaccgaaggaactgtacgatgagaaaaaggtcattcccatctcaaagattgacagg
atggccacagcgaaagccatcgaggagaacattgagaatgaactcgcaaaacttccagac
caattgaagattacatggcctgagggaaacgcttgggaagacaaagatgcttatccagct
ggaacaccaatgggtccaattaaagtggagattttgaacagaaaaggatattcgatctct
cgtctgcctggaacaggcaatataaagaaactggtggtcgagctgacagtcaccaggcag
tcgcctaagaaagatgaccaaactaagaaagatgtacaaactaactctcacattgctgtt
cattcaaccaagtgggagtactggttcaagaccatggagaatctcactaagattggaaaa
tacacactgcatctgcagaccaagctgagcgacagttcagaaagccattgggttggaaaa
aaattacccaactacaccctcaacttttctattaaagagggtaaagcggaatcttttaaa
atcggtcaggtttcctctcctgtccttgttggagttcccttcagcgtccctctggatttc
cgggatcagtttgagtattccactcagcctcccagtggcattaaaccccagctggagtgc
agttcactgaagttgagttatgatgggatcgcgtttgggacgactgcagtcatcaacaat
gtgagagccttgggaaagatcaaacagcaaggcaagaagcacacagtgaaggtgcgcatc
ccggggctgaagcaggacattgattcttttcaactcgctctggaacctggtcctccacac
actctggtggtgtttccagatggagatgtgctctctgttgagaacgggacgccggtcaac
tttaaagtggaggttcatgatgagtgccagaatatcaccgctcatcctaaactcgccgtc
cgctgccagatgatgggagctcctgatctgccggtggacattgtggactgcagtaacacc
ggctctggactcatgctgactaaaccactgtctctgaagactgtaaatgctgaacagatc
tttaccgtaaaattcaacatccctaaccacaggacagtgtcgagtgtggagcgtcagctg
cgtgttttgcccagcactcggatatcccgtatagaggtgtacagacaggaagagggctcc
gatgatgtcatggtgctgcagaattccgagcgcattgattggacggcaggagacacactg
ggaaacctgtacttcagactgtatgacgagggcaacagactggtgtccctccagccaaaa
ataaccagcaaaattaaggtgaactggacggcaaagctaaacgcagaagatctggctcag
gggaagctgccgtgtttgggtgtcccgactcaagctcagagagagcatttctaccacgtg
tcattccaggaccagcacgccgtcaacatgtccttcatcattgtgccacgtccagacgag
cctgagcgtttgcgggtcagactcggcgaatctactgtcaagatgggtgaagttctgtca
ggcagcacatatgtggaagtgatggatcagtatgggaataaaacagaccgtctggatgca
gaaagtgtgaactctttaagtgtttctgctgacggtctggataacgaggctctggctgta
gaatggcaggcgagagctggacatttttgtgttagtggcatccgttttgtatccggatcc
ccaggctcacgagagctgagtttccagctccagcgcatgaaggagtttgtgcgagttgat
gtgactgcaggagctccagcacagataaaactgctggaggagctggagatgcctttgcag
gtcatgaatggtcatggtttggagactccactgaccatgcagctctgtgaccaatgggga
aatgcttcaccagaccagcgggttaacattgtgttgaagactcgcacctcacagttgaag
attaagtcctcagtatcatctcagcctgttgattcaaagggaaaagcttgcttcgtttta
gaagctataagtggtccaaaaggggaacatgagctggagtttcggggcttttttagcagg
aatggcattcctgggcccataatcaaactgaatttgattcctgatcctaacaaacctgta
aagctctgtgttgaatacgacagccgtgtcactctgtgtgctggagacatctttccagat
tttatggtggtggtgaagtctgaagaaggctcagcggtgaaaaacatctgtcctgcaaat
ctgtccatgctgctgtggaaaggcacggcgtcaggctcctgtcctcccgccgcagcctcg
acgctaaagtgcagtaaacggaaagactcagagaaagacgacagcttctgcttcagagat
aagcagattcctgagctagcaggccaatatgttgtgcagtttgttttggctttagaccaa
accaaacatctatggagcaaacagattccactgaatgtatttgccaataaagccacgaag
ttagcccctgagattccacctgctactcctgttgtgtccaatagtaacgttcgggccaat
cggacgctgttgtacagcttgactctaaagatcatggatcagtacagtaacgttgctggt
gaaggtctggatggacaagtggttgttacagtgaccggcactggagacattgtgattcct
ttgtttgagaataaagagaaacgtcggtcatacagccttactaacggagagactgtcatt
actgatctggttctgctagagaacagtcccggggtggacggagccgagtatgttctccag
ttcagtcccgagattcagcagacgggggtttccatcgccccgtacagcctgccgttcaga
ttctgcaacgatgcagatcatcagaaagtcattgtgactctcagcaagaagaaggaccgt
ctttcccaaactattaagatgttcagagagttcttcgacaccaatcaacaactgatatct
gaactagagtgccaggttcgagatgctttgcacaaactaaatgagttcaaaccagagctc
aagagaaatggcatctcagcactatccactgtttcagaaatagaggatttaataaatgcc
aagaaagccaatttaaccaaaatggagaatcagcccagacggaaatgcactgtgcctgac
cccttcagaggcagcccacaagttctgggaaaggtcgctcatctggcgctggtgaaggat
gacaatgtggcgaaggtgatatcttggcatctgctgggcgacatggactgtgtggtcact
gaaaccacatctgcagccaagaggatctacgatgacacacacggacgtcaacaggtcctg
cccctcgagacgatcttctggaagccctacgacaagcgtcttcctcacatcaggaacggc
tcggctctcttccgtccacttggggatcctgtgtttgtcaaagatctgctcatttttcct
gaatatgcagaaagctgcaataaagttttcaccactctgcttggagacaccatattgatt
gatgatctggattctgctaatcaatatcgtcgaggggtggttcagaataaaatacagtgc
cctaccattttaacacggcaaggagagcggatccgctgcaatgggaagtttggcggtctg
cagaacaaggctccgtctattgagaaacttcgaggacaggtgtttggagcacctttacct
gctgaatacaaccaaacacgccttcagatagatttactgcagcagtatcgtgttgcgatg
cagaaggcgtccaccgtgcaagctgacttaaatagtcatttaatggatctgcagagtccg
attatgacacaaaagaagcaagagctcgaggagcaagaggtggagttacaagagattgag
aaaacccttgccagaactccagaacagatgtctgacgctgtgagagtcaagcggagtctg
gagccagaatcctcagacacaccagttcttccaaaaaggatccgtcgcaaacctcttaaa
atggattcatga
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