Danio rerio (zebrafish): 554561 Help Entry 554561            CDS       T01004                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism dre  Danio rerio (zebrafish) Pathway dre04010   MAPK signaling pathway dre04120   Ubiquitin mediated proteolysis dre04140   Autophagy - animal dre04144   Endocytosis dre04620   Toll-like receptor signaling pathway dre04621   NOD-like receptor signaling pathway dre04622   RIG-I-like receptor signaling pathway dre05132   Salmonella infection dre05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:dre00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     554561 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     554561 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     554561 (traf6)    04140 Autophagy - animal     554561 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     554561 (traf6)    04621 NOD-like receptor signaling pathway     554561 (traf6)    04622 RIG-I-like receptor signaling pathway     554561 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     554561 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     554561 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:dre04131]     554561 (traf6)    04121 Ubiquitin system [BR:dre04121]     554561 (traf6) Enzymes [BR:dre01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      554561 (traf6) Membrane trafficking [BR:dre04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     554561 (traf6) Ubiquitin system [BR:dre04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     554561 (traf6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_4 TRAF3_RING zf-RING_5 Sina_ZnF zf-TRAF_2 DM RING_XB3-XBAT31 HOOK CEP104_ZnF U-box DUF4472 zf-RING_11 zf_UBZ TRAF6_Z2 Motif Other DBs NCBI-GeneID:  554561 NCBI-ProteinID:  NP_001038217 ZFIN:  ZDB-GENE-030131-5735 Ensembl:  ENSDARG00000028058 UniProt:  Q6IWL4 A0AB32TYI6 Structure PDBPDBj LinkDB All DBs Position 7:complement(48719923..48738718) Genome browser AA seq 542 aa AA seqDB search MACNDVDKSSFDDVCCDSGHSSCAAAMEKERESFLSPTENPSTISVSSSMPPDQQGYDVE FDPPLESKYECPICLMGLRSAVQTPCGHRFCDSCIRKSIRDTGQKCPVDNEVLLEEQLFP DNFAKREILSLTVKCSNFGCSEKMELRQLEKHLSQCRFATAPCPQCQESVPISHLDEHKS QHCLQRIMTCPDCAGSFVYAVKQNHEQFCPFANTVCEYCEMELIRDQLALHCDTDCLKAP VACTFSTFGCREKMTRNELAQHMQEFTQMHMRYMAEFLRSQTLNNCTMPSAAAHLSSDDR GASARSPDSCQCKQELLNLRETVLELEGRLVRQDQQIRELCIHNDTQKNQVTELRRKLVS LEESTRELEAQQYQGIYVWRVENFSHHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQ TPSAPRCSNFISLFVHTMQGEFDSQLSWPLQGTIRLAVLDQVEGQHHIEVMETKPDLQAF QRPTVMRNPKGFGYVTFLHLQALRQRGFVKEDVLLVRCEVTPRFDASLRREGVQPRGPEP SI NT seq 1629 nt NT seq  +upstreamnt  +downstreamnt atggcttgcaacgacgtggacaagtccagcttcgatgatgtctgctgtgacagcggacac tcgagttgtgctgcagctatggagaaggagagggagtcgtttctgagcccaacagagaac ccgtccaccatcagtgtttcatctagtatgcctcctgaccagcaaggctatgatgtagag tttgaccctccactagagagcaagtatgagtgccctatctgtctgatgggtctccgctcg gcagtacagaccccctgtggccatcgattctgtgactcgtgcattaggaaatccatcagg gacacggggcagaaatgtccagttgacaacgaggtgctgcttgaggaacagcttttccct gataactttgccaaacgagagatcctctcactcaccgtcaaatgttctaactttggatgc agtgaaaaaatggagttgcgccaattagagaaacacttgtctcagtgcaggtttgccact gcgccgtgccctcaatgtcaggagtctgttcccataagccacctggatgaacataagagc cagcattgcttacagcggattatgacctgccctgactgtgctgggagctttgtgtatgct gtcaaacagaatcatgaacagttttgtcctttcgccaatacagtgtgtgaatattgcgaa atggagctcattcgggatcagttggcgctgcactgtgacaccgactgtctaaaagctcct gtggcctgtactttcagcacttttggatgtcgtgaaaagatgacaagaaatgagctggcc cagcacatgcaggagtttacacagatgcacatgcgttacatggctgagtttctccgcagc cagactctcaataactgcacaatgccctcagctgctgcccacttgtcctcagatgatcgt ggagcctccgcccgatcgccagattcttgtcagtgcaaacaggagctcctgaacctgcga gagacagtactggagctggagggtcggctggtccgtcaagatcagcaaatccgggagctg tgcatccacaacgacacgcagaaaaaccaggtcactgagctacggcgaaagcttgtctca ctagaggagagcacccgagagctggaggcgcagcagtaccagggcatctacgtgtggcgt gtggagaacttctcacaccacctgcgcaaccaagaagccggtcagcctattgtcctccac agcccacccttctacacaggccggcctgggtacaaactctgcctgcgactgcacctgcaa acccccagtgctcctcgctgttctaacttcatctcgcttttcgtgcacactatgcagggt gagtttgacagccagctctcctggcccctccagggcaccattcggctggcagtgctggac caggtagaggggcagcaccatattgaagtgatggagaccaagccagacctgcaggctttc cagaggcctaccgtgatgcgcaaccccaaaggattcggctatgtgacgtttctgcacctg caggcattgcggcagcgtggttttgtgaaagaggacgtgctgttggtgcgctgtgaggtc acaccacgatttgacgctagtctcaggagggaaggtgttcaacctcgaggaccagaacct tcaatttga

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