Danio rerio (zebrafish): 557456
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Entry
557456 CDS
T01004
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a isoform 2
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dre01009
]
557456 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dre04040
]
557456 (trpc5a)
Protein phosphatases and associated proteins [BR:
dre01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
557456 (trpc5a)
Ion channels [BR:
dre04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
557456 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_3
Ank
Ank_4
Ank_5
YVC1_C
PKD_channel
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
557456
NCBI-ProteinID:
NP_001038292
ZFIN:
ZDB-GENE-040812-1
Ensembl:
ENSDARG00000070504
UniProt:
Q1MT28
LinkDB
All DBs
Position
1:complement(11893986..12031411)
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AA seq
570 aa
AA seq
DB search
MNPMSHLYYKKSSYSPYRDRIPLQIVRAEVELSPEERAFLSAVEKGDYAGVQHALREAEV
YYNIDTNCVDPLGRSALLIAIENENLEVMELLLDHGVNTGDALLYAIRKEVVGAVELLLS
HRKPSGEKQVPSLMMDAQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKLFAKDLLDQARSSRELETILNHRDDQSEELDPRECRDLAKLKLAIKYH
QKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVMCFIIGLLFPVFSLVYLLAPKSTLG
LFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTVVEWMILPWVLGFIWA
EIKEMWDGGFNEYVHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTLI
AEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQ
LYFYYETEAADEPNHCKGIRCERQNNAFST
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgtcacatctatactacaaaaagagcagctactctccgtaccgggaccga
atccctctgcagatcgtccgggcggaggtagagctctctccagaggagcgtgcgttcctt
tcggctgtggaaaagggcgactatgcaggagtccagcatgcactgcgtgaggctgaggtc
tattacaacatcgacacgaactgtgtggatccacttggccgcagtgcactattaattgcc
attgagaacgaaaacctggaggtgatggagctgcttctggatcatggagtaaacactgga
gacgctctgctctacgccatccgcaaagaagtggtgggggccgtggagctactgctgtcc
cataggaaacccagtggagagaaacaggtcccttccttaatgatggacgcccagttctcg
gagttcacgcctgacatcacccctatcatgctggcagctcacacaaacaactacgagatc
atcaaactcctggttcagcgcaaagtcaccatccctcggccgcaccagatccgctgcgac
tgcgtggagtgtgtgtccagctctgaagtggacagtctgcgtcactcccggtcccgtctc
aacatctacaaagcgcttgccagcccgtccctcatcgccctctccagcgaggatcccatc
ctgaccgccttcagactgggctgggaactcaaggagctcagcaaagtggagaacgagttt
cggcaggagtacgaggagctttctcagcagtgcaagctcttcgctaaagacctgctggac
caggcacgaagctcccgtgagctggagaccattctcaaccaccgtgacgatcagagtgag
gagctggacccacgcgagtgcagagacctggccaaactcaagctggccatcaaataccac
cagaaagagtttgtggcacagccaaactgccagcagcttttggccacactgtggtatgac
ggttttcctggctggcggcgccgtcattgggcagtcaagttggtcatgtgcttcattatc
ggcctgctcttcccagtcttctcgctggtttacctgctggctcccaagagcacgctgggg
ctcttcatcaaaaaacccttcatcaagtttatctgccacacggcctcctacctcaccttc
ctcttcctcctcctcctggcctcacagcacattgcacgcaccaacctacacatgcagggc
cctccgcccaccgtggtggagtggatgattctaccttgggtgctgggctttatatgggct
gagattaaggagatgtgggatggaggttttaacgagtacgtccatgactggtggaacctg
atggactttgctatgaattctctctatttggccaccatttctctaaagatcgtggcttat
gtcaagtataacagttctcgtccgcgagaggaatgggagatgtggcatccgacgttgatc
gctgaagctttgtttgccatcgccaacattttcagctctcttcggctcatctctctgttc
acggcgaactctcacctgggcccgctgcagatctctctgggccgcatgctgctggacatc
ctcaagttcctcttcatctactgtttagtgctgctggcctttgccaacggactcaaccag
ctttacttttactatgagacagaggcggcagatgagcccaaccactgcaaggggatccgc
tgcgagaggcagaacaatgcattctctacgtga
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