Danio rerio (zebrafish): 561901 Help Entry 561901            CDS       T01004                                  Symbol thbs1b Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism dre  Danio rerio (zebrafish) Pathway dre04115   p53 signaling pathway dre04145   Phagosome dre04148   Efferocytosis dre04350   TGF-beta signaling pathway dre04510   Focal adhesion dre04512   ECM-receptor interaction dre04518   Integrin signaling dre04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:dre00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     561901 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     561901 (thbs1b)    04518 Integrin signaling     561901 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     561901 (thbs1b)    04148 Efferocytosis     561901 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     561901 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     561901 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     561901 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:dre04131]     561901 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:dre00536]     561901 (thbs1b) Membrane trafficking [BR:dre04131]  Endocytosis   Phagocytosis    Opsonins     561901 (thbs1b) Glycosaminoglycan binding proteins [BR:dre00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    561901 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 TSP1_ADAMTS Laminin_G_3 cEGF TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  561901 NCBI-ProteinID:  XP_005160819 ZFIN:  ZDB-GENE-020708-1 Ensembl:  ENSDARG00000010785 UniProt:  F1QL35 LinkDB All DBs Position 20:complement(31774374..31788448) Genome browser AA seq 1171 aa AA seqDB search MKSTAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAEKGFLLLVNFKQFKRTRGSLLTVEKNDGSGPVFEIVS NGKANTLDIVFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNVAELDA SIHTILTQEIPGVAKMRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSAMTDII TLDNPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAAMFKELKGLGVVVQELSNELRKV TDDKNMLMNQMGIRAGVCLHNGIVHKNKEEWTVDDCTECTCQNSATVCRKISCPLIPCAN ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMDGKDCQGEGR QTERCEKSPCPINGGWGPWSPWDTCSVTCGGGVQNRKRLCNNPVPKHGGKECVGDAKVSQ ICNKQACPVDGCLSSPCFEGAQCTSFPDGSWKCGKCPTGYTGNGINCKDVNECKEVPDAC FEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDAAAKKQVCTPRNPCLDGSHDCNK NARCNYLGHFSDPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCP NLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPLVFNPRQYDYDRDDVGDRCDNCPY NSNPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYLYNVDQKDTDLDGVGDQCDNCPLE HNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDD NDGIPDEKDNCRLVFNPDQLDSDGDGRGDACKDDFDMDNVLDIYDVCPENFDISETDFRK FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY DKTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgaagtcaactgcaatctttttgctactgatgctttggaactgcgagagcgcgagagtc gcagagagtcgagacgacaacagtgtttacgatctgttcgagctggtccaagtaccaagg aaaaaccacggagtgaccctggtgaaaggcgacgacccgtacagccccgcctacaagatc ctgaaccccgacctgatccccccggtccccgagagcgcctttagggacctaatcgattcc attcacgccgagaaaggatttctgctgctggttaatttcaagcagttcaaacgcacgagg ggaagcctgctgactgtggagaagaatgacggttctggacccgtgtttgaaatcgtttcc aacgggaaagccaacactctggacattgttttttccaccgagaacaagcagcaggtcgtg tccatcgaggaagcggacttggcggtgggacactggaaaaacatcactcttttcgtgcaa gaggacagggttcagttctatgtgggatgtgaggaggtgaacgtggcggagctcgatgcc tcaatccacaccatcctgactcaggagattccaggtgtggccaaaatgaggatcggtaaa ggcgcggtgaaggacaggttcatgggggtgttgcaaaacgtgcgctttgtattcggaacc acgctggaagccatcctgaggaataaagggtgccaaaactcagcaatgactgatatcatt acccttgacaatcccataaatggatccagccctgcaatcaggacagattacactggccac aaaacaaaagatctgcaaatgatttgtggcttttcatgtgaggatctggctgccatgttt aaggaactgaaaggtcttggtgtggtggttcaagaactgtccaatgaactccgaaaagtg acggatgacaaaaacatgctcatgaatcaaatgggcattcgtgctggtgtatgtcttcac aatggaattgtgcacaaaaacaaggaggaatggacagtggacgactgcacagagtgcact tgccagaattctgcaacggtgtgccgcaagatttcatgtcccctaatcccatgtgcaaat gccacagtacctgatggagagtgctgccctcgctgtggaacaccgagcgactccgccgag gatggttggtccccctggtctgaatggacccattgttcagtgtcctgtggaaggggcatt cagcagcgcggccgttcctgcgaccgcatcaataacaactgtgagggcacgtcagtgcag accagagactgctacctccaggagtgcgacaagcgctttaagcaagacggtagctggagc cactggtcaccctggtcatcgtgttcggtcacatgtggtgctggtgttattacacgcatc cgtctctgtaactccccgacacctcaaatggatggcaaagactgccagggtgaagggcgg caaactgagaggtgtgagaaatcaccatgtccgatcaacggtggctggggaccatggtcg ccctgggatacttgctctgttacctgtggtggtggcgtccaaaaccgtaagcgtctttgc aataatcctgtacccaaacatggtggcaaagagtgtgtgggagatgcaaaggtcagccag atttgcaacaaacaagcctgtcctgttgatggatgtctttcgagtccgtgctttgaaggg gcccagtgcacaagctttccagatgggtcctggaaatgtggaaaatgccccacaggatac actggcaatggaatcaactgcaaagatgtcaatgagtgtaaggaagtaccagatgcctgc tttgaatttaatggagtccacagatgtgagaacacagtgccaggctacaactgtctccct tgccccactcgttacaccgggccacagccgtttggccgtggagtggaggacgccgctgct aagaagcaggtgtgcactcctcgaaatccctgcctggatggaagccacgactgcaataaa aacgctcgctgcaactacctgggccatttctctgaccccatgttccgctgtgaatgcaaa cctggctttgctggaaatggacacatctgtggagaagatactgatcttgatggttggccg aatgctgatctcgtgtgtgttgagaacgcaacctatcactgcaagaaggacaactgccca aatcttcccaactcagggcaagaagactatgacaaggatggcattggtgatgcatgtgac gatgatgatgatgacgatggcattcctgatgacagggataactgcccactcgtcttcaac ccgagacagtacgactatgatcgggatgatgttggtgaccgttgtgataactgtccctac aacagcaacccagaccagacagacactgacaacaatggagaaggagacgcctgtgctgtg gacattgatggagatggtattctgaacgagaaagacaactgtccgtatctgtacaacgtc gaccagaaagacactgatcttgatggagttggagaccagtgtgacaactgtccattggaa cacaacccagatcagctggactctgattctgaccgcgttggagacaaatgtgacagtaac caggatatcgatgaagacggtcaccagaacaacctggacaactgtccatacatccccaat gccaaccaggctgatcatgacaaggacggtaaaggagatgcctgcgactacgatgatgat aatgatggcattcctgacgaaaaagacaactgcagactggtcttcaatccagatcagcta gattctgatggcgatggacgtggcgatgcctgtaaagatgactttgacatggacaatgtt ctggatatctatgatgtctgtcctgagaacttcgatatcagtgaaaccgacttccgcaag ttccagatggttcctctggatcccaagggcacttctcagatcgatcccaactgggtggtt cgtcatcaaggaaaagagctggttcagacagtcaactgcgaccctggcattgctgttggt tttgatgagttcaattcagtggacttcagtggaacattcttcatcaacactgagagggat gacgactatgctggttttgttttcggataccagtccagctctcgcttctatgtggtcatg tggaagcagatcacacagacctactggtccagcacacctaccaaagcacagggttactca gggctgtccatcaaagtggttaattccaccacaggacctggggagcatctgagaaacgcc ctttggcacactggagacacaccaggacaggtgcgcacattgtggcatgacccaaagaat gtgggatggaaggactttactgcttacagatggcacctgacacacagaccaagaactgga cacataagagtggtcatgtatgaaggcaaaaagatcatggcagattctggcagaatctac gacaaaacatacgcaggcggaagactaggtctcttcgtcttctcacaagagatggtgtat ttctcagacctcaaatacgaatgcagagatgcgtaa

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