Dinoroseobacter shibae: Dshi_1509
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Entry
Dshi_1509 CDS
T00612
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03030
DNA replication
dsh03410
Base excision repair
dsh03420
Nucleotide excision repair
dsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dshi_1509 (ligA)
03410 Base excision repair
Dshi_1509 (ligA)
03420 Nucleotide excision repair
Dshi_1509 (ligA)
03430 Mismatch repair
Dshi_1509 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsh03032
]
Dshi_1509 (ligA)
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_1509 (ligA)
Enzymes [BR:
dsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dshi_1509 (ligA)
DNA replication proteins [BR:
dsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dshi_1509 (ligA)
DNA repair and recombination proteins [BR:
dsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dshi_1509 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dshi_1509 (ligA)
MMR (mismatch excision repair)
DNA ligase
Dshi_1509 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dshi_1509 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
ABV93251
RoseoBase:
Dshi_1509
UniProt:
A8LK52
LinkDB
All DBs
Position
1568730..1570955
Genome browser
AA seq
741 aa
AA seq
DB search
MSKDGPFRFGARGLWTSGQALLFLDPLGVWMGTPMNDTYVAVEALSEAAARKELARLSEL
LARANAEYHRDDAPSLSDADYDALKQRNAAIEARFPDLKRGDSPSDQVGAAPSDTFSKVT
HAVRMLSLANAFSDEDIRDFDTRIRRFLGLAEDAPLAYTAEPKIDGLSLSLRYEHGTLVQ
AATRGDGAVGENVTANARTIDDIPHRLDGAPEVLEVRGEVYMSHADFAELNARQAETGGK
TFANPRNAAAGSLRQLDAEITRARPLKFFAYAWGEISAPLAETQTETLARFREFGFTINP
LTVRCETPEDMLAQYRAIEAQRATLGYDIDGVVYKLDDLDLQRRLGFRSTTPRWAIAHKF
PAELAWTRLEAIDIQVGRTGALSPVARLAPVTVGGVVVSNATLHNEDYIQGRDNTGAPIR
WGTDIRVGDWVQVYRAGDVIPKIRDVDLSRRPEGAAPFDFPTTCPECGSDAPREPGDAVR
RCSGGLICPAQAVEKLKHFVSRGALDIDGLGAKQVEQFYRDGWIAEPADIFTLRARFGQG
LQQLKNREGWGDKSAENLFRAIDTARTAPFAKVLFGLGIRHIGESASSLLANHYLTMEAL
LAAVDAAVDETSDAWADLLNIDGVGEVMARALVTTLTQEAERASVNRLLAQIDPAPATPP
QVGDSPVAGKTLVFTGTLETMSRAEAKATAEALGAKVAGSVSAKTDLLIAGPGAGSKATK
AEALGIEVIDEDAWRVLAGLA
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggacggtcctttccgtttcggcgcccgcgggctctggacctcggggcaagcg
ctgctattccttgacccgctgggagtgtggatggggaccccgatgaacgacacgtatgtt
gcggtcgaagcgctgagcgaggcggcggcgcggaaagagcttgcgcgcctgtcggagctg
ctcgcccgtgccaacgcggaataccaccgcgacgatgcgcccagcctgtcggatgccgat
tacgacgcgctcaaacagcgcaacgcggcgatcgaggcgcgttttcccgacctgaaacga
ggtgacagccccagcgaccaggtcggcgccgcaccctcggacacgttttcgaaggtcacc
cacgcggtgcggatgctgtcgctggcaaacgccttttccgacgaggatatccgggacttc
gacacccgcatccgccgcttcctcgggctggccgaagacgccccgctcgcctacaccgcc
gagcccaagatcgacggtctgtccctgtcgctgcgctatgaacacggcacgctggtgcag
gccgccacccggggcgacggggccgtgggcgagaacgtgaccgccaatgcgcgcaccatc
gacgacatcccgcacaggctcgacggggcgccggaagtgctggaagtgcgcggcgaggtc
tatatgtcgcacgccgatttcgccgagctgaatgcgcgccaggccgagaccgggggcaag
accttcgccaatccgcgcaacgcggccgccgggtcgctgcgccagctcgatgccgagatc
acccgcgcgcggcccctgaaattcttcgcctatgcctggggggagatctccgccccgctt
gccgagacccagaccgaaacactggcgcggtttcgcgaattcgggttcacgataaacccc
ttgaccgtgcgctgcgagacccccgaagatatgctcgcccagtaccgcgcgatcgaggcg
cagcgtgccacgctgggctatgacatcgacggggtggtctacaagctcgacgatctcgac
ctgcagcgccggctcgggttccgttccaccacgccccgctgggcgattgcccacaagttt
ccggccgagctcgcctggacccggctggaggcgatcgacatccaggtcgggcgcaccggc
gctctcagccccgtggcgcggctcgccccggtcaccgtgggcggcgtggtggtgtcgaac
gccaccctgcataacgaggactacatccagggccgcgacaacaccggcgcgccgatccgg
tgggggacggatatccgggtgggcgactgggtgcaggtctaccgcgcgggcgatgtgatc
cccaagatcagggatgtggatctgtcgcgccgccccgaaggcgcagcccccttcgacttt
cccacgacctgtcccgaatgcggctccgacgcgccgcgggagcccggcgatgcggtgcgc
cggtgcagcggtgggttgatctgcccggcccaggcggtcgagaagctgaagcatttcgtc
tcccgcggggcgctggatatcgacgggctgggcgccaagcaggtggagcagttctaccgc
gacggctggatcgcggagcctgcggatatcttcaccctgcgcgcgcgcttcggccagggg
ttgcagcagctcaagaaccgcgagggctggggcgacaagagcgccgagaacctgttccgt
gccatcgataccgcgcgcacggcgccttttgccaaggtcctgttcggcctcggcatccgc
catatcggcgagagcgcctcgtcgcttctggccaatcactacctgaccatggaggcgctg
ttggccgcggtcgacgcggccgtggacgagaccagcgatgcctgggcggatctgctcaat
atcgatggggtgggggaggtgatggcccgcgccctggtcaccaccctgacacaagaggcg
gagcgcgcctctgtcaaccggttgctggcgcagatcgatccggccccggcgacgccgccg
caggtcggggacagtcccgtggcgggcaagacgctggtcttcaccgggacgctggagacc
atgtcgcgggccgaggccaaggccaccgccgaggcactgggggccaaggtcgcggggtcg
gtttcggcgaagacagaccttctgatcgccgggccgggggccggttccaaggccaccaag
gccgaagccctgggcatcgaggtgatcgacgaggacgcctggcgcgttctggcggggctt
gcgtga
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