KEGG   PATHWAY: elp03430
Entry
elp03430                    Pathway                                
Name
Mismatch repair - Escherichia coli P12b
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
elp03430  Mismatch repair
elp03430

Other DBs
GO: 0006298
Organism
Escherichia coli P12b [GN:elp]
Gene
P12B_c0172  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
P12B_c0198  dnaQ; DNA polymerase III, epsilon subunit-related 3-5 exonuclease [KO:K02342] [EC:2.7.7.7]
P12B_c0434  xseB; Exodeoxyribonuclease 7 small subunit [KO:K03602] [EC:3.1.11.6]
P12B_c0482  dnaX; DNA polymerase III, tau and gamma subunits [KO:K02343] [EC:2.7.7.7]
P12B_c0622  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
P12B_c1241  exoX; Exodeoxyribonuclease 10 [KO:K10857] [EC:3.1.11.-]
P12B_c1243  holE; DNA polymerase III, theta subunit [KO:K02345] [EC:2.7.7.7]
P12B_c1882  exoX; DNA polymerase III, epsilon subunit [KO:K10857] [EC:3.1.11.-]
P12B_c1884  [KO:K03111]
P12B_c2008  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
P12B_c2116  sbcB; Exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
P12B_c2522  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
P12B_c2610  xseA; Exodeoxyribonuclease 7 large subunit [KO:K03601] [EC:3.1.11.6]
P12B_c2747  [KO:K06223] [EC:2.1.1.72]
P12B_c2836  mutS; DNA mismatch repair protein mutS [KO:K03555]
P12B_c2924  mutH; DNA mismatch repair protein mutH [KO:K03573]
P12B_c2989  recJ; Single-stranded-DNA-specific exonuclease recJ [KO:K07462] [EC:3.1.-.-]
P12B_c3485  [KO:K06223] [EC:2.1.1.72]
P12B_c3775  ligB; DNA ligase B [KO:K01972] [EC:6.5.1.2]
P12B_c3836  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
P12B_c3938  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
P12B_c4164  [KO:K03111]
P12B_c4265  mutL; DNA mismatch repair protein mutL [KO:K03572]
P12B_c4366  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
P12B_c4447  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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