KEGG   PATHWAY: ena03430
Entry
ena03430                    Pathway                                
Name
Mismatch repair - Escherichia coli NA114 (UPEC)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ena03430  Mismatch repair
ena03430

Other DBs
GO: 0006298
Organism
Escherichia coli NA114 (UPEC) [GN:ena]
Gene
ECNA114_0174  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
ECNA114_0200  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
ECNA114_0399  xseB; Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
ECNA114_0449  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
ECNA114_0580  holA; DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
ECNA114_0897  sbcB; Exonuclease I [KO:K01141] [EC:3.1.11.1]
ECNA114_0976  [KO:K06223] [EC:2.1.1.72]
ECNA114_1156  holB; DNA polymerase III delta prime subunit [KO:K02341] [EC:2.7.7.7]
ECNA114_1889  [KO:K02345] [EC:2.7.7.7]
ECNA114_1891  [KO:K10857] [EC:3.1.11.-]
ECNA114_2488  lig; DNA ligase [KO:K01972] [EC:6.5.1.2]
ECNA114_2584  xseA; Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
ECNA114_2769  mutS; DNA mismatch repair protein [KO:K03555]
ECNA114_2891  mutH; DNA mismatch repair endonuclease [KO:K03573]
ECNA114_2934  recJ; Single-stranded-DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
ECNA114_3484  dam; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
ECNA114_3791  ligB; DNA ligase [KO:K01972] [EC:6.5.1.2]
ECNA114_3851  dnaN; DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
ECNA114_3950  uvrD; ATP-dependent DNA helicase UvrD [KO:K03657] [EC:5.6.2.4]
ECNA114_4231  ssb; Single-stranded DNA-binding protein [KO:K03111]
ECNA114_4386  mutL; DNA mismatch repair protein MutL [KO:K03572]
ECNA114_4482  holC; DNA polymerase III chi subunit [KO:K02339] [EC:2.7.7.7]
ECNA114_4612  holD; DNA polymerase III psi subunit [KO:K02344] [EC:2.7.7.7]
ECNA114_4732  [KO:K03111]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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