KEGG   PATHWAY: gacu03050
Entry
gacu03050                   Pathway                                
Name
Proteasome - Gymnodraco acuticeps
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
gacu03050  Proteasome
gacu03050

Other DBs
GO: 0000502
Organism
Gymnodraco acuticeps [GN:gacu]
Gene
117532371  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
117533644  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
117534671  psmb12; proteasome 20S subunit beta 12 [KO:K02738] [EC:3.4.25.1]
117534672  psmb13a; LOW QUALITY PROTEIN: proteasome 20S subunit beta 13a [KO:K02739] [EC:3.4.25.1]
117534679  psmb8a; LOW QUALITY PROTEIN: proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
117534789  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
117536342  psmc4; LOW QUALITY PROTEIN: 26S proteasome regulatory subunit 6B [KO:K03063]
117536835  psme4a; proteasome activator complex subunit 4A isoform X1 [KO:K06699]
117537499  psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
117537687  [KO:K06698]
117537765  psme2; LOW QUALITY PROTEIN: proteasome activator complex subunit 2 [KO:K06697]
117539704  [KO:K02730] [EC:3.4.25.1]
117540798  psma2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
117542254  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
117542580  [KO:K03029]
117543600  psme1; proteasome activator complex subunit 1 [KO:K06696]
117543633  pomp; proteasome maturation protein [KO:K11599]
117543942  psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
117544017  [KO:K06699]
117545011  psmc5; 26S proteasome regulatory subunit 8 [KO:K03066]
117545630  psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
117545631  psmb11a; proteasome subunit beta type-11a [KO:K11598] [EC:3.4.25.1]
117545731  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
117547075  psmd11b; 26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
117547389  psme3; proteasome activator complex subunit 3 [KO:K06698]
117547504  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
117549228  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
117549283  [KO:K02728] [EC:3.4.25.1]
117550037  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
117550607  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
117550998  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
117551451  psmc3; 26S proteasome regulatory subunit 6A [KO:K03065]
117551452  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
117552602  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
117554020  [KO:K03029]
117554283  [KO:K03062]
117554369  [KO:K02730] [EC:3.4.25.1]
117554970  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
117558195  psmb10; proteasome subunit beta type-10 [KO:K02739] [EC:3.4.25.1]
117558356  psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
117558742  adrm1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
117558989  [KO:K06691]
117559107  psmb9a; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
117559406  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
117559730  psmd1; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
117561909  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
117562009  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
117562521  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
117562847  sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
gacu04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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