KEGG   PATHWAY: gacu04120
Entry
gacu04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Gymnodraco acuticeps
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
gacu04120  Ubiquitin mediated proteolysis
gacu04120

Other DBs
GO: 0016567
Organism
Gymnodraco acuticeps [GN:gacu]
Gene
117532621  [KO:K03364]
117532637  [KO:K02207] [EC:2.3.2.23]
117532639  [KO:K03869]
117532830  itchb; itchy E3 ubiquitin protein ligase b isoform X1 [KO:K05632] [EC:2.3.2.26]
117533431  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
117533533  prkn; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
117534073  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
117534632  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
117534707  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
117534788  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
117534845  cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
117534910  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
117534978  pias2; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
117534982  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
117535335  [KO:K06689] [EC:2.3.2.23]
117535532  [KO:K10577]
117535702  cdc27; LOW QUALITY PROTEIN: cell division cycle protein 27 homolog [KO:K03350]
117535782  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
117535970  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
117536004  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
117536022  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
117536121  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
117536382  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
117536555  si:rp71-68n21.9; kelch-like protein 9 isoform X1 [KO:K10447]
117536754  cdc23; cell division cycle protein 23 homolog [KO:K03355]
117537737  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
117537804  [KO:K08770]
117537868  ube2o; LOW QUALITY PROTEIN: (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
117537918  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
117538005  [KO:K04678] [EC:2.3.2.26]
117538462  ube2g1a; ubiquitin-conjugating enzyme E2 G1a isoform X1 [KO:K10575] [EC:2.3.2.23]
117538650  ube2j1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
117538723  [KO:K10607] [EC:2.3.2.27]
117538895  [KO:K10582] [EC:2.3.2.23]
117538908  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
117538953  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
117539058  [KO:K10575] [EC:2.3.2.23]
117539163  [KO:K03347]
117539303  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
117539566  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
117539629  det1; DET1 homolog [KO:K10571]
117539673  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
117539857  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
117540201  ube2b; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
117540209  skp1; S-phase kinase-associated protein 1 isoform X1 [KO:K03094]
117540617  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
117540691  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
117541105  [KO:K03364]
117541562  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
117541749  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
117541884  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
117542817  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
117542904  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
117543134  [KO:K10686] [EC:6.2.1.64]
117543160  [KO:K20217] [EC:2.3.2.23]
117543161  [KO:K20217] [EC:2.3.2.23]
117543378  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
117543415  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
117543469  [KO:K10573] [EC:2.3.2.23]
117543485  cul4b; cullin-4B [KO:K10609]
117543594  [KO:K05633] [EC:2.3.2.26]
117543692  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
117543711  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
117544006  anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
117544317  cblb; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-B-B [KO:K22517] [EC:2.3.2.27]
117544340  mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
117544360  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
117544524  cdc16; cell division cycle protein 16 homolog [KO:K03353]
117544825  [KO:K10605] [EC:2.3.2.27]
117545034  [KO:K03873]
117545101  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
117545115  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
117545292  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
117545443  fzr1b; fizzy-related protein homolog [KO:K03364]
117545719  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
117545757  [KO:K10576] [EC:2.3.2.23]
117545980  uba1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
117546001  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
117546147  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
117546228  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
117546435  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
117546722  [KO:K08285] [EC:2.3.2.27]
117546810  herc2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
117547104  [KO:K04707] [EC:2.3.2.27]
117547478  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
117547773  [KO:K10612]
117548080  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
117548316  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
117548346  elob; elongin-B [KO:K03873]
117548354  cul4a; cullin-4A isoform X1 [KO:K10609]
117548778  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
117548931  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
117549163  [KO:K10582] [EC:2.3.2.23]
117549320  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
117549341  [KO:K04706] [EC:2.3.2.-]
117549362  ddb1; DNA damage-binding protein 1 [KO:K10610]
117550243  cul2; cullin-2 isoform X1 [KO:K03870]
117550753  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
117550930  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
117551024  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
117551252  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
117551336  [KO:K04552] [EC:2.3.2.23]
117551380  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
117551968  socs1a; LOW QUALITY PROTEIN: suppressor of cytokine signaling 1a [KO:K04694]
117552023  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
117552199  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
117552269  ube4a; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
117552448  herc4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
117553215  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
117553326  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
117553459  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
117554103  [KO:K10602] [EC:2.3.2.27]
117554713  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
117555231  ubr5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
117555793  fbxw11a; F-box/WD repeat-containing protein 11a isoform X1 [KO:K03362]
117555937  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
117555951  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
117556073  [KO:K04694]
117556099  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
117556241  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
117556532  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
117556842  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
117557268  ubb; LOW QUALITY PROTEIN: polyubiquitin-B [KO:K08770]
117557369  rnf7; LOW QUALITY PROTEIN: RING-box protein 2 [KO:K10611]
117557385  cul3b; cullin-3b isoform X1 [KO:K03869]
117557577  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
117557828  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
117557923  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
117558205  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
117558351  aire; autoimmune regulator [KO:K10603]
117558435  cdc20; cell division cycle protein 20 homolog [KO:K03363]
117558550  fbxo4; F-box only protein 4 [KO:K10291]
117558573  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
117558680  ubox5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
117558874  [KO:K06689] [EC:2.3.2.23]
117559471  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
117559877  anapc4; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 4 [KO:K03351]
117559960  [KO:K20217] [EC:2.3.2.23]
117559985  [KO:K20217] [EC:2.3.2.23]
117560319  ube2d1b; ubiquitin-conjugating enzyme E2 D1b [KO:K06689] [EC:2.3.2.23]
117560786  [KO:K06689] [EC:2.3.2.23]
117560796  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
117561003  [KO:K07868]
117561094  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
117561360  [KO:K10614] [EC:2.3.2.26]
117561413  [KO:K03872]
117561437  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
117561815  [KO:K10612]
117561887  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
117562463  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
117562532  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
117562883  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
117563185  [KO:K04678] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
gacu03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system