KEGG   PATHWAY: hhi03030
Entry
hhi03030                    Pathway                                
Name
DNA replication - Haloarcula hispanica ATCC 33960
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hhi03030  DNA replication
hhi03030

Organism
Haloarcula hispanica ATCC 33960 [GN:hhi]
Gene
HAH_0004  polA1; DNA polymerase II small subunit [KO:K02323] [EC:2.7.7.7]
HAH_0050  mcm; cell division control protein/MCM family protein [KO:K10726] [EC:5.6.2.3]
HAH_0121  pri1; DNA primase large subunit [KO:K18882]
HAH_0128  dnaN1; DNA polymerase sliding clamp [KO:K04802]
HAH_0304  lig1; DNA ligase [KO:K01972] [EC:6.5.1.2]
HAH_0470  rnhB; RNAase HII [KO:K03470] [EC:3.1.26.4]
HAH_0560  rnhA; ribonuclease H-like protein [KO:K03469] [EC:3.1.26.4]
HAH_0793  [KO:K04799] [EC:3.1.-.-]
HAH_1034  pri2; DNA primase small subunit [KO:K02683] [EC:2.7.7.102]
HAH_1173  lig2; DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
HAH_1583  [KO:K10742] [EC:5.6.2.3 3.1.-.-]
HAH_2254  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
HAH_2278  rfcB; replication factor C large subunit [KO:K04800]
HAH_2356  polB1; DNA polymerase elongation subunit (family B) [KO:K02319] [EC:2.7.7.7]
HAH_2754  rpaA3; replication factor A [KO:K07466]
HAH_2919  rfcC2; replication factor C small subunit 2 [KO:K04801]
HAH_2989  rfcS; replication factor C small subunit [KO:K04801]
HAH_3092  polA2; DNA polymerase II large subunit [KO:K02322] [EC:2.7.7.7]
HAH_4097  dnaN2; DNA polymerase sliding clamp [KO:K04802]
HAH_4158  dnaN3; DNA polymerase sliding clamp [KO:K04802]
HAH_5101  rnh; RNaseH [KO:K03469] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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