KEGG   PATHWAY: hmh03030
Entry
hmh03030                    Pathway                                
Name
DNA replication - Hylobates moloch (silvery gibbon)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hmh03030  DNA replication
hmh03030

Organism
Hylobates moloch (silvery gibbon) [GN:hmh]
Gene
116456184  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
116456946  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
116458899  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X3 [KO:K07466]
116459670  [KO:K10740]
116459745  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
116461198  PCNA; proliferating cell nuclear antigen [KO:K04802]
116462850  MCM6; DNA replication licensing factor MCM6 isoform X1 [KO:K02542] [EC:5.6.2.3]
116464575  [KO:K02209] [EC:5.6.2.3]
116464576  [KO:K02209] [EC:5.6.2.3]
116465674  RPA4; replication protein A 30 kDa subunit [KO:K10741]
116466813  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
116467089  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
116467297  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
116468865  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
116468994  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
116469014  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
116469073  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
116470546  [KO:K02328]
116474606  [KO:K03111]
116475574  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
116476685  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
116477657  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
116477853  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
116478111  [KO:K02327] [EC:2.7.7.7]
116478268  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
116478540  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
116479945  RFC4; replication factor C subunit 4 [KO:K10755]
116480509  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
116480718  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
116480893  PRIM1; DNA primase small subunit isoform X2 [KO:K02684] [EC:2.7.7.102]
116483456  POLE4; DNA polymerase epsilon subunit 4 isoform X2 [KO:K03506] [EC:2.7.7.7]
116810919  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
116811050  [KO:K04802]
116811585  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
116811587  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
116812493  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
116813156  RPA2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
116813309  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
116813697  RPA3; replication protein A 14 kDa subunit [KO:K10740]
116814437  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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