KEGG   PATHWAY: hol02010
Entry
hol02010                    Pathway                                
Name
ABC transporters - Vreelandella olivaria
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
hol02010  ABC transporters
hol02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Vreelandella olivaria [GN:hol]
Gene
HORIV_02120  [KO:K01999]
HORIV_02180  [KO:K01998]
HORIV_02210  [KO:K01996]
HORIV_03420  [KO:K05816] [EC:7.6.2.10]
HORIV_03430  [KO:K05816] [EC:7.6.2.10]
HORIV_03440  [KO:K05815]
HORIV_03450  [KO:K05815]
HORIV_03460  [KO:K05814]
HORIV_03470  ugpB; ABC transporter substrate-binding protein [KO:K05813]
HORIV_03560  [KO:K10111] [EC:7.5.2.-]
HORIV_03970  [KO:K02044]
HORIV_03990  phnC_1; phosphonates import ATP-binding protein PhnC [KO:K02041] [EC:7.3.2.2]
HORIV_04010  [KO:K02042]
HORIV_04020  [KO:K02042]
HORIV_04280  [KO:K09815]
HORIV_05890  [KO:K12536]
HORIV_06700  [KO:K09812]
HORIV_06710  ftsX; cell division protein FtsX [KO:K09811]
HORIV_07970  [KO:K07091]
HORIV_07980  [KO:K11720]
HORIV_11170  ccmA; cytochrome c biogenesis ATP-binding export protein CcmA [KO:K02193] [EC:7.6.2.5]
HORIV_11180  [KO:K02194]
HORIV_11190  [KO:K02195]
HORIV_14080  [KO:K06159]
HORIV_14130  [KO:K23227]
HORIV_14140  [KO:K10829] [EC:7.2.2.16]
HORIV_14210  [KO:K23227]
HORIV_14510  [KO:K23227]
HORIV_14760  [KO:K23228]
HORIV_14790  [KO:K06159]
HORIV_18250  [KO:K10227]
HORIV_18260  [KO:K10227]
HORIV_18270  [KO:K10228]
HORIV_18280  [KO:K10228]
HORIV_18300  [KO:K10229]
HORIV_18310  malK_1; maltose/maltodextrin import ATP-binding protein MalK [KO:K10111] [EC:7.5.2.-]
HORIV_19070  [KO:K17315]
HORIV_19090  [KO:K17316]
HORIV_19100  [KO:K17317]
HORIV_20870  [KO:K09691] [EC:7.5.2.14]
HORIV_20880  [KO:K09691] [EC:7.5.2.14]
HORIV_22130  [KO:K01996]
HORIV_22140  [KO:K01996]
HORIV_22150  [KO:K01995]
HORIV_22160  [KO:K01998]
HORIV_22180  [KO:K01997]
HORIV_22190  [KO:K01997]
HORIV_22200  [KO:K01999]
HORIV_23110  [KO:K02002]
HORIV_23430  [KO:K11069]
HORIV_23440  [KO:K11071]
HORIV_23450  [KO:K11070]
HORIV_24310  [KO:K05772]
HORIV_24320  [KO:K06857] [EC:7.3.2.6]
HORIV_24330  [KO:K05773]
HORIV_26090  [KO:K06861] [EC:7.5.2.5]
HORIV_26140  [KO:K02065]
HORIV_26150  [KO:K02066]
HORIV_26170  [KO:K02067]
HORIV_26180  [KO:K07323]
HORIV_26190  [KO:K07122]
HORIV_26860  [KO:K09808]
HORIV_28320  [KO:K01995]
HORIV_28330  [KO:K01996]
HORIV_28340  [KO:K01999]
HORIV_28360  [KO:K01997]
HORIV_28370  [KO:K01998]
HORIV_29480  [KO:K17321]
HORIV_29510  [KO:K17323]
HORIV_29520  [KO:K17322]
HORIV_29530  [KO:K17325]
HORIV_29560  [KO:K17324]
HORIV_29690  [KO:K02002]
HORIV_32200  metQ; lipoprotein [KO:K02073]
HORIV_32220  [KO:K02072]
HORIV_32240  [KO:K02071]
HORIV_32250  [KO:K02071]
HORIV_33760  [KO:K05846]
HORIV_33770  [KO:K05847] [EC:7.6.2.9]
HORIV_33900  [KO:K02067]
HORIV_33910  [KO:K02065]
HORIV_33930  [KO:K02066]
HORIV_34400  [KO:K13896]
HORIV_34410  [KO:K13896]
HORIV_34430  [KO:K13895]
HORIV_34440  [KO:K13894]
HORIV_34470  [KO:K13893]
HORIV_34670  [KO:K15598]
HORIV_38070  [KO:K19340]
HORIV_38090  nosY; membrane protein NosY [KO:K19341]
HORIV_38370  [KO:K11963]
HORIV_38380  [KO:K11962]
HORIV_38400  [KO:K11961]
HORIV_38410  [KO:K11960]
HORIV_38420  [KO:K11959]
HORIV_41330  malE; maltose ABC transporter substrate-binding protein MalE [KO:K10108]
HORIV_41340  [KO:K10109]
HORIV_41350  malG; maltose transporter permease [KO:K10110]
HORIV_41570  malK_2; maltose/maltodextrin import ATP-binding protein MalK [KO:K10111] [EC:7.5.2.-]
HORIV_41690  [KO:K10237]
HORIV_41700  [KO:K10238]
HORIV_41740  [KO:K10111] [EC:7.5.2.-]
HORIV_43400  pstB; phosphate import ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
HORIV_43410  pstA; phosphate transport system permease protein PstA [KO:K02038]
HORIV_43460  [KO:K02040]
HORIV_44500  cysP; thiosulfate transporter subunit [KO:K02048]
HORIV_44510  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
HORIV_44550  cysA1; sulfate/thiosulfate import ATP-binding protein CysA 1 [KO:K02045] [EC:7.3.2.3]
HORIV_44840  [KO:K11074]
HORIV_44860  [KO:K11075]
HORIV_44870  potG; polyamine-transporting ATPase [KO:K11076] [EC:7.6.2.16]
HORIV_44880  potF; putrescine-binding periplasmic protein [KO:K11073]
HORIV_46200  [KO:K02002]
HORIV_46390  [KO:K10025] [EC:7.4.2.1]
HORIV_46400  [KO:K10024]
HORIV_46410  aotM; arginine/ornithine transporter AotM [KO:K10023]
HORIV_46420  argT; ABC transporter substrate-binding protein [KO:K10022]
HORIV_49730  [KO:K18893]
HORIV_50690  [KO:K23061]
HORIV_50730  [KO:K23062]
HORIV_50740  [KO:K23063]
HORIV_50750  [KO:K23064]
HORIV_50900  [KO:K23187]
HORIV_51110  [KO:K02000] [EC:7.6.2.9]
HORIV_51120  [KO:K02001]
HORIV_51140  [KO:K02002]
HORIV_53520  [KO:K02018]
HORIV_53530  [KO:K02020]
HORIV_56660  [KO:K02010] [EC:7.2.2.7]
HORIV_56680  idiA; iron deficiency-induced protein A [KO:K02012]
HORIV_56690  [KO:K16012]
HORIV_58580  [KO:K16963]
HORIV_58590  [KO:K16962]
HORIV_58610  [KO:K16961]
HORIV_58910  [KO:K10111] [EC:7.5.2.-]
HORIV_58940  [KO:K10119]
HORIV_58950  [KO:K10118]
HORIV_58970  [KO:K10117]
HORIV_59040  [KO:K10439]
HORIV_59050  [KO:K10440]
HORIV_59060  [KO:K10441] [EC:7.5.2.7]
HORIV_59160  [KO:K10538]
HORIV_59190  araG; L-arabinose ABC transporter ATP-binding protein AraG [KO:K10539] [EC:7.5.2.12]
HORIV_59210  [KO:K10537]
HORIV_60040  [KO:K05816] [EC:7.6.2.10]
HORIV_60050  [KO:K05813]
HORIV_60060  [KO:K05814]
HORIV_60080  [KO:K05815]
HORIV_60290  [KO:K02012]
HORIV_60310  [KO:K02011]
HORIV_65790  znuB2; membrane protein [KO:K09816]
HORIV_65800  znuC2; zinc import ATP-binding protein ZnuC 2 [KO:K09817] [EC:7.2.2.20]
HORIV_65820  [KO:K09815]
HORIV_68000  [KO:K11963]
HORIV_68010  [KO:K11962]
HORIV_68020  [KO:K11961]
HORIV_68030  [KO:K11960]
HORIV_68060  [KO:K11959]
HORIV_68650  [KO:K09969]
HORIV_68660  [KO:K09970]
HORIV_68670  [KO:K09971]
HORIV_68690  [KO:K09972] [EC:7.4.2.1]
HORIV_68720  [KO:K02044]
HORIV_68740  phnC_2; phosphonates import ATP-binding protein PhnC [KO:K02041] [EC:7.3.2.2]
HORIV_68760  [KO:K02042]
HORIV_68950  [KO:K23227]
HORIV_69150  [KO:K10112] [EC:7.5.2.-]
HORIV_71800  pstS; phosphate-binding protein PstS [KO:K02040]
HORIV_71810  [KO:K02037]
HORIV_71820  [KO:K02038]
HORIV_71830  [KO:K02038]
HORIV_71840  [KO:K02036] [EC:7.3.2.1]
HORIV_71850  [KO:K02036] [EC:7.3.2.1]
HORIV_72940  [KO:K10022]
HORIV_73470  [KO:K10038] [EC:7.4.2.1]
HORIV_73490  [KO:K10037]
HORIV_73500  glnH; amino acid ABC transporter substrate-binding protein [KO:K10036]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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