Homo sapiens (human): 23435
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Entry
23435 CDS
T01001
Symbol
TARDBP, ALS10, TDP-43
Name
(RefSeq) TAR DNA binding protein
KO
K23600
TAR DNA-binding protein 43
Organism
hsa
Homo sapiens (human)
Pathway
hsa03015
mRNA surveillance pathway
hsa05014
Amyotrophic lateral sclerosis
hsa05022
Pathways of neurodegeneration - multiple diseases
Network
nt06464
Amyotrophic lateral sclerosis
nt06466
Pathways of neurodegeneration
Element
N01136
Mutation-caused aberrant TDP43 to electron transfer in Complex I
N01154
TDP-43-regulated splicing
N01155
Mutation-caused aberrant TDP43 to TDP-43-regulated splicing
Disease
H00058
Amyotrophic lateral sclerosis (ALS)
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
23435 (TARDBP)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
23435 (TARDBP)
05022 Pathways of neurodegeneration - multiple diseases
23435 (TARDBP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsa03019
]
23435 (TARDBP)
Messenger RNA biogenesis [BR:
hsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
23435 (TARDBP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
RRM_3
RL
Motif
Other DBs
NCBI-GeneID:
23435
NCBI-ProteinID:
NP_031401
OMIM:
605078
HGNC:
11571
Ensembl:
ENSG00000120948
UniProt:
Q13148
Q9H256
Structure
PDB
LinkDB
All DBs
Position
1:11012654..11030528
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatatattcgggtaaccgaagatgagaacgatgagcccattgaaataccatcg
gaagacgatgggacggtgctgctctccacggttacagcccagtttccaggggcgtgtggg
cttcgctacaggaatccagtgtctcagtgtatgagaggtgtccggctggtagaaggaatt
ctgcatgccccagatgctggctggggaaatctggtgtatgttgtcaactatccaaaagat
aacaaaagaaaaatggatgagacagatgcttcatcagcagtgaaagtgaaaagagcagtc
cagaaaacatccgatttaatagtgttgggtctcccatggaaaacaaccgaacaggacctg
aaagagtattttagtacctttggagaagttcttatggtgcaggtcaagaaagatcttaag
actggtcattcaaaggggtttggctttgttcgttttacggaatatgaaacacaagtgaaa
gtaatgtcacagcgacatatgatagatggacgatggtgtgactgcaaacttcctaattct
aagcaaagccaagatgagcctttgagaagcagaaaagtgtttgtggggcgctgtacagag
gacatgactgaggatgagctgcgggagttcttctctcagtacggggatgtgatggatgtc
ttcatccccaagccattcagggcctttgcctttgttacatttgcagatgatcagattgcg
cagtctctttgtggagaggacttgatcattaaaggaatcagcgttcatatatccaatgcc
gaacctaagcacaatagcaatagacagttagaaagaagtggaagatttggtggtaatcca
ggtggctttgggaatcagggtggatttggtaatagcagagggggtggagctggtttggga
aacaatcaaggtagtaatatgggtggtgggatgaactttggtgcgttcagcattaatcca
gccatgatggctgccgcccaggcagcactacagagcagttggggtatgatgggcatgtta
gccagccagcagaaccagtcaggcccatcgggtaataaccaaaaccaaggcaacatgcag
agggagccaaaccaggccttcggttctggaaataactcttatagtggctctaattctggt
gcagcaattggttggggatcagcatccaatgcagggtcgggcagtggttttaatggaggc
tttggctcaagcatggattctaagtcttctggctggggaatgtag
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