Homo sapiens (human): 7536 Help Entry 7536              CDS       T01001                                  Symbol SF1, BBP, D11S636, MBBP, ZCCHC25, ZFM1, ZNF162 Name (RefSeq) splicing factor 1   KO K13095   splicing factor 1 Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome Network nt06547  Spliceosome   Element N01968   Spliceosome assembly (E and A complex formation) Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     7536 (SF1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     7536 (SF1) Spliceosome [BR:hsa03041]  Complex A   Other components    Complex A specific factors     7536 (SF1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  SF1-HH KH-I_KHDC4-BBP KH_1 zf-CCHC KH_12 zf-CCHC_5 zf-CCHC_3 KH_NusA_1st Motif Other DBs NCBI-GeneID:  7536 NCBI-ProteinID:  NP_004621 OMIM:  601516 HGNC:  12950 Ensembl:  ENSG00000168066 UniProt:  Q15637 Structure PDBPDBj LinkDB All DBs Position 11:complement(64764606..64778542) Genome browser AA seq 639 aa AA seqDB search MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIED LTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALN PDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGK GSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLR KMQLRELARLNGTLREDDNRILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPGDP QSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPAAPANNPPPPSLMS TTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGP PPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPP PPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGS IPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPP PPPPPPMDPSNFVTMMGMGVAGMPPFGMPPAPPPPPPQN NT seq 1920 nt NT seq  +upstreamnt  +downstreamnt atggcgaccggagcgaacgccacgccgttggacttcccaagtaagaagcggaagaggagc cgctggaaccaagacacaatggaacagaagacagtgattccaggaatgcctacagttatt ccccctggacttactcgagaacaagaaagagcttatatagtgcaactgcagatagaagac ctgactcgtaaactgcgcacaggagacctgggcatcccccctaaccctgaggacaggtcc ccttcccctgagcccatctacaatagcgaggggaagcggcttaacacccgagagttccgc acccgcaaaaagctggaagaggagcggcacaacctcatcacagagatggttgcactcaat ccggatttcaagccacctgcagattacaaacctccagcaacacgtgtgagtgataaagtc atgattccacaagatgagtacccagaaatcaactttgtggggctgctcatcgggcccaga gggaacaccctgaagaacatagagaaggagtgcaatgccaagattatgatccgggggaaa gggtctgtgaaagaagggaaggttgggcgcaaagatggccagatgttgccaggagaagat gagccacttcatgccctggttactgccaatacaatggagaacgtcaaaaaggcagtggaa cagataagaaacatcctgaagcagggtatcgagactccagaggaccagaatgatctacgg aagatgcagcttcgggagttggctcgcttaaatgggacccttcgggaagacgataacagg atcttaagaccctggcagagctcagagacccgcagcattaccaacaccacagtgtgtacc aagtgtggaggggctggccacattgcttcagactgtaaattccaaaggcctggtgatcct cagtcagctcaggataaagcacggatggataaagaatatttgtccctcatggctgaactg ggtgaagcacctgtcccagcatctgtgggctccacctctgggcctgccaccacacccctg gccagcgcacctcgtcctgctgctcccgccaacaacccacctccaccgtctctcatgtct accacccagagccgcccaccctggatgaattctggcccttcagagagtcggccctaccac ggcatgcatggaggtggtcctggtgggcccggaggtggcccccacagcttcccacaccca ttacccagcctgacaggtgggcatggtggacatcccatgcagcacaaccccaatggaccc ccacccccttggatgcagccaccaccaccaccgatgaaccagggcccccaccctcctggg caccatggccctcctccaatggatcagtacctgggaagtacgcctgtgggctctggggtc tatcgcctgcatcaaggaaaaggtatgatgccgccaccacctatgggcatgatgccgccg ccgccgccgcctcccagtgggcagcccccaccccctccctctggtcctcttcccccatgg caacaacagcagcagcagcctccgccaccccctccgcccagcagcagtatggcttccagt acccccttgccatggcagcaaaatacgacgactaccaccacgagcgctggcacagggtcc atcccgccatggcaacagcagcaggcggctgccgcagcttctccaggagcccctcagatg caaggcaaccccactatggtgcccctgccccccggggtccagccgcctctgccgcctggg gcccctccccctccgccgcctccaccgcctggttccgccggcatgatgtatgccccgccc cctcctcctccgcctcccatggacccttctaactttgtcaccatgatgggcatgggggtg gcgggcatgccgcccttcgggatgcctccagctcccccaccgcctccaccacagaactag

Homo sapiens (human): 7307 Help Entry 7307              CDS       T01001                                  Symbol U2AF1, FP793, RN, RNU2AF1, U2AF35, U2AFBP Name (RefSeq) U2 small nuclear RNA auxiliary factor 1   KO K12836   splicing factor U2AF 35 kDa subunit Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome hsa05131   Shigellosis Network nt06547  Spliceosome   Element N01968   Spliceosome assembly (E and A complex formation) N01970   Spliceosome assembly (B complex formation) N01971   spliceosome activation N01972   Spliceosome catalysis (branching) N01993   Spliceosome catalysis (exon ligation) N01994   Spliceosome disassembly Disease H02410   Myelodysplastic/myeloproliferative neoplasms H02411   Chronic myelomonocytic leukemia Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     7307 (U2AF1)  09160 Human Diseases   09171 Infectious disease: bacterial    05131 Shigellosis     7307 (U2AF1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     7307 (U2AF1) Spliceosome [BR:hsa03041]  Complex A   U2 snRNP components    U2 related factors     7307 (U2AF1)  Complex B     7307 (U2AF1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  zf-CCCH RRM_1 Torus zf_CCCH_4 zf-CCCH_2 Motif Other DBs NCBI-GeneID:  7307 NCBI-ProteinID:  NP_001020374 OMIM:  191317 HGNC:  12453 Ensembl:  ENSG00000160201 UniProt:  Q01081 Structure PDBPDBj LinkDB All DBs Position 21:complement(43092956..43107578) Genome browser AA seq 240 aa AA seqDB search MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF NT seq 723 nt NT seq  +upstreamnt  +downstreamnt atggcggagtatctggcctccatcttcggcaccgagaaagacaaagtcaactgttcattt tatttcaaaattggagcatgtcgtcatggagacaggtgctctcggttgcacaataaaccg acgtttagccagaccatcttgattcaaaacatctatcgtaatccccaaaacagtgcacag acggctgacggctcacactgtgccgtgagcgatgtggagatgcaggaacactatgatgag ttttttgaggaggtttttacagaaatggaggagaagtatggggaagtagaggagatgaac gtctgtgacaacctgggagaccacctggtggggaacgtgtacgtcaagtttcgccgtgag gaagatgcggaaaaggctgtgattgacttgaataaccgttggtttaatggacagccgatc cacgccgagctgtcacccgtgacggacttcagagaagcctgctgccgtcagtatgagatg ggagaatgcacacgaggcggcttctgcaacttcatgcatttgaagcccatttccagagag ctgcggcgggagctgtatggccgccgtcgcaagaagcatagatcaagatcccgatcccgg gagcgtcgttctcggtctagagaccgtggtcgtggcggtggcggtggcggtggtggaggt ggcggcggacgggagcgtgacaggaggcggtcgagagatcgtgaaagatctgggcgattc tga

Homo sapiens (human): 11338 Help Entry 11338             CDS       T01001                                  Symbol U2AF2, DEVDFB, U2AF65 Name (RefSeq) U2 small nuclear RNA auxiliary factor 2   KO K12837   splicing factor U2AF 65 kDa subunit Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome Network nt06547  Spliceosome   Element N01968   Spliceosome assembly (E and A complex formation) N01970   Spliceosome assembly (B complex formation) N01971   spliceosome activation N01972   Spliceosome catalysis (branching) N01993   Spliceosome catalysis (exon ligation) N01994   Spliceosome disassembly Disease H02993   Developmental delay, dysmorphic facies, and brain anomalies Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     11338 (U2AF2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     11338 (U2AF2) Spliceosome [BR:hsa03041]  Complex A   U2 snRNP components    U2 related factors     11338 (U2AF2)  Complex B     11338 (U2AF2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 RRM_occluded RRM_7 Transformer Motif Other DBs NCBI-GeneID:  11338 NCBI-ProteinID:  NP_009210 OMIM:  191318 HGNC:  23156 Ensembl:  ENSG00000063244 UniProt:  P26368 Structure PDBPDBj LinkDB All DBs Position 19:55655035..55674716 Genome browser AA seq 475 aa AA seqDB search MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQV PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW NT seq 1428 nt NT seq  +upstreamnt  +downstreamnt atgtcggacttcgacgagttcgagcggcagctcaacgagaataaacaagagcgggacaag gagaaccggcatcggaagcgcagccacagccgctctcggagccgggaccgcaaacgccgg agccggagccgcgaccggcgcaaccgggaccagcggagcgcctcccgggacaggcgacga cgcagcaaacctttgaccagaggcgctaaagaggagcacggtggactgattcgttccccc cgccacgagaagaagaagaaggtccgtaaatactgggacgtgccacccccaggctttgag cacatcaccccaatgcagtacaaggccatgcaagctgcgggtcagattccagccactgct cttctccccaccatgacccctgacggtctggctgtgaccccaacgccggtgcccgtggtc gggagccagatgaccagacaagcccggcgcctctacgtgggcaacatcccctttggcatc actgaggaggccatgatggatttcttcaacgcccagatgcgcctgggggggctgacccag gcccctggcaacccagtgttggctgtgcagattaaccaggacaagaattttgcctttttg gagttccgctcagtggacgagactacccaggctatggcctttgatggcatcatcttccag ggccagtcactaaagatccgcaggcctcacgactaccagccgcttcctggcatgtcagag aacccctccgtctatgtgcctggggttgtgtccactgtggtccccgactctgcccacaag ctgttcatcgggggcttacccaactacctgaacgatgaccaggtcaaagagctgctgaca tcctttgggcccctcaaggccttcaacctggtcaaggacagtgccacggggctctccaag ggctacgccttctgtgagtacgtggacatcaacgtcacggatcaggccattgcggggctg aacggcatgcagctgggggataagaagctgctggtccagagggcgagtgtgggagccaag aatgccacgctggtgagccccccgagcaccatcaatcagacgcctgtgaccctgcaagtg ccgggcttgatgagctcccaggtgcagatgggcggccacccgactgaggtcctgtgcctc atgaacatggtgctgcctgaggagctgctggacgacgaggagtatgaggagatcgtggag gacgtgcgggacgagtgcagcaagtacgggcttgtcaagtccatcgagatcccccggcct gtggacggcgtcgaggtgcccggctgcggaaagatctttgtggagttcacctctgtgttt gactgccagaaagccatgcagggcctgacgggccgcaagttcgccaacagagtggttgtc acaaaatactgtgaccccgactcttatcaccgccgggacttctggtag

Homo sapiens (human): 22827 Help Entry 22827             CDS       T01001                                  Symbol PUF60, FIR, RoBPI, SIAHBP1, VRJS Name (RefSeq) poly(U) binding splicing factor 60   KO K12838   poly(U)-binding-splicing factor PUF60 Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome Network nt06547  Spliceosome   Element N01968   Spliceosome assembly (E and A complex formation) Disease H01800   Verheij syndrome Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     22827 (PUF60)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     22827 (PUF60) Spliceosome [BR:hsa03041]  Complex A   U2 snRNP components    U2 related factors     22827 (PUF60)  Complex B     22827 (PUF60) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 RRM_7 Motif Other DBs NCBI-GeneID:  22827 NCBI-ProteinID:  NP_510965 OMIM:  604819 HGNC:  17042 Ensembl:  ENSG00000179950 UniProt:  Q9UHX1 Structure PDBPDBj LinkDB All DBs Position 8:complement(143816344..143829315) Genome browser AA seq 559 aa AA seqDB search MATATIALQVNGQQGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLT PEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQ RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR KVVAEVYDQERFDNSDLSA NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt atggcgacggcgaccatagctctccaggtcaatggccagcaaggaggggggtccgagccg gcggcggcggcggcagtggtggcagcgggagacaaatggaaacctccacagggcacagac tccatcaagatggagaacgggcagagcacagccgccaagctggggctgcctcccctgacg cccgagcagcaggaggcccttcagaaggccaagaagtacgccatggagcagagcatcaag agtgtgctggtgaagcagaccatcgcgcaccagcagcagcagctcaccaacctgcagatg gcagcagtgacaatgggctttggagatcctctctcacctttgcaatcgatggcggctcag cggcagcgggcgctggccatcatgtgccgcgtctacgtgggctctatctactatgagctg ggggaggacaccatccgccaggcctttgccccctttggccccatcaagagcatcgacatg tcctgggactccgtcaccatgaagcacaagggctttgccttcgtggagtatgaggtcccc gaagctgcacagctggccttggagcagatgaactcggtgatgctggggggcaggaacatc aaggtgggcagacccagcaacatagggcaggcccagcccatcatagaccagttggctgag gaggcacgggccttcaaccgcatctacgtggcctctgtgcaccaggacctctcagacgat gacatcaagagcgtgtttgaggcctttggcaagatcaagtcctgcacactggcccgggac cccacaactggcaagcacaagggctacggcttcattgagtacgagaaggcccagtcgtcc caagatgctgtgtcttccatgaacctctttgacctgggtggccagtacttgcgggtgggc aaggctgtcacaccgcccatgcccctactcacaccagccacgcctggaggcctcccacct gccgctgctgtggcagctgctgcagccactgccaagatcacagctcaggaagcagtggcc ggagcagcggtgctgggtaccctgggcacacctggactggtgtccccagcactgaccctg gcccagcccctgggcactttgccccaggctgtcatggctgcccaggcacctggagtcatc acaggtgtgaccccagcccgtcctcctatcccggtcaccatcccctcggtgggagtggtg aaccccatcctggccagccctccaacgctgggtctcctggagcccaagaaggagaaggaa gaagaggagctgtttcccgagtcagagcggccagagatgctgagcgagcaggagcacatg agcatctcgggcagtagcgcccgacacatggtgatgcagaagctgctccgcaagcaggag tctacagtgatggttctgcgcaacatggtggaccccaaggacatcgatgatgacctggaa ggggaggtgacagaggagtgtggcaagttcggggccgtgaaccgcgtcatcatctaccaa gagaaacaaggcgaggaggaggatgcagaaatcattgtcaagatctttgtggagttttcc atagcctctgagactcataaggccatccaggccctcaatggccgctggtttgctggccgc aaggtggtggctgaagtgtacgaccaggagcgttttgataacagtgacctctctgcgtga

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