KEGG   Homo sapiens (human): 9129
Entry
9129              CDS       T01001                                 
Symbol
PRPF3, HPRP3, HPRP3P, PRP3, Prp3p, RP18, SNRNP90
Name
(RefSeq) pre-mRNA processing factor 3
  KO
K12843  U4/U6 small nuclear ribonucleoprotein PRP3
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Network
nt06547  Spliceosome
  Element
N01969  U4/U6-U5 snRNP fomation
N01970  Spliceosome assembly (B complex formation)
N01971  spliceosome activation
Disease
H00527  Retinitis pigmentosa
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9129 (PRPF3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    9129 (PRPF3)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    9129 (PRPF3)
SSDB
Motif
Pfam: PRP3 Prp3_C PWI
Other DBs
NCBI-GeneID: 9129
NCBI-ProteinID: NP_004689
OMIM: 607301
HGNC: 17348
Ensembl: ENSG00000117360
UniProt: O43395
Structure
LinkDB
Position
1:150321468..150353233
AA seq 683 aa
MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG
VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH
RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH
FKKHGAEHYWDLALSESVLESTD
NT seq 2052 nt   +upstreamnt  +downstreamnt
atggcactgtcaaagagggagctggatgagctgaaaccatggatagagaagacagtgaag
agggtcctgggtttctcagagcctacggtggtcacagcagcattgaactgtgtggggaag
ggcatggacaagaagaaggcagccgatcatctgaaaccttttcttgatgattctactctc
cgatttgtggacaaactgtttgaggctgtggaggaaggccgaagctctaggcattccaag
tctagcagtgacaggagcagaaaacgagagctaaaggaggtgtttggtgatgactctgag
atctctaaagaatcatcaggagtaaagaagcgacgaataccccgttttgaggaggtggaa
gaagagccagaggtgatccctgggcctccatcagagagccctggcatgctgactaagctc
cagatcaaacagatgatggaggcagcaacacgacaaatcgaggagaggaaaaaacagctg
agcttcattagcccccctacacctcagccaaagactccttcttcctcccaaccagaacga
cttcctattggcaacactattcagccctcccaggctgccactttcatgaatgatgccatt
gagaaggcaaggaaagcagctgaactgcaagctcgaatccaagcccagctggcactgaag
ccaggactcatcggcaatgccaacatggtgggcctggctaatctccatgccatgggcatt
gctcccccgaaggtggagttaaaagaccaaacgaaacctacaccactgatcctggatgag
caagggcgcactgtagatgcaacaggcaaggagattgagctgacacaccgcatgcctact
ctgaaagccaatattcgtgctgtgaagagggaacaattcaagcaacaactaaaggaaaag
ccatcagaagacatggaatccaataccttttttgacccccgagtctccattgccccttcc
cagcgccagagacgcacttttaaattccatgacaagggcaaatttgagaagattgctcag
cgattacggacaaaggctcaactggagaagctacaggcagagatttcacaagcagctcga
aaaacaggcatccatacttcgactaggcttgccctcattgctcctaagaaggagctaaag
gaaggagatattcctgaaattgagtggtgggactcttacataatccccaatggctttgat
cttacagaggaaaatcccaagagagaagattattttggaatcacaaatcttgttgaacat
ccagcccagctcaatcctccagttgacaatgacacaccagttactctgggagtatatctt
accaagaaggaacagaaaaaacttcggagacaaacaaggagggaagcacagaaggaacta
caagaaaaagtcaggctgggcctgatgcctcctccagaacccaaagtgagaatttctaat
ttgatgcgagtattaggaacagaagctgttcaagaccccacgaaggtagaagcccacgtc
agagctcagatggcaaaaagacagaaagcgcatgaagaggccaacgctgcccgaaaactc
acagcagaacagagaaaggtcaagaaaattaaaaagcttaaagaagacatttcacagggg
gtacacatatctgtatatagagttcgaaatttgagcaacccagccaagaagttcaagatt
gaagccaatgctgggcaactgtacctgacaggggtggtggtactgcacaaggatgtcaac
gtggtagtagtggaagggggccccaaggcccagaagaaatttaagcgtcttatgctgcat
cggataaagtgggatgaacagacatctaacacaaagggagatgatgatgaggagtctgat
gaggaagctgtgaagaaaaccaacaaatgtgtactagtctgggagggtacagccaaagac
cggagctttggagagatgaagtttaaacagtgtcctacagagaacatggctcgtgagcat
ttcaaaaagcatggggctgaacactactgggaccttgcgctgagtgaatctgtgttagag
tccactgattga

KEGG   Homo sapiens (human): 6100
Entry
6100              CDS       T01001                                 
Symbol
RP9, PAP-1, PAP1
Name
(RefSeq) RP9 pre-mRNA splicing factor
  KO
K19604  retinitis pigmentosa 9 protein
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Network
nt06547  Spliceosome
  Element
N01969  U4/U6-U5 snRNP fomation
N01970  Spliceosome assembly (B complex formation)
N01971  spliceosome activation
Disease
H00527  Retinitis pigmentosa
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    6100 (RP9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    6100 (RP9)
Spliceosome [BR:hsa03041]
 Complex A
  U2 snRNP components
   U2 related factors
    6100 (RP9)
 Complex B
    6100 (RP9)
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    6100 (RP9)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    6100 (RP9)
SSDB
Motif
Pfam: AP3D1 Med19 SR-25
Other DBs
NCBI-GeneID: 6100
NCBI-ProteinID: NP_976033
OMIM: 607331
HGNC: 10288
Ensembl: ENSG00000164610
UniProt: Q8TA86 A0A090N8Z0
LinkDB
Position
7:complement(33094797..33109404)
AA seq 221 aa
MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLI
KEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKEC
PFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSE
GKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE
NT seq 666 nt   +upstreamnt  +downstreamnt
atgtcgtcccggcctgggcgcgaggacgtgggggctgcgggcgcgcggcggccgcgtgag
ccgccggagcaggagctgcagcgacgtcgggagcagaagcggcggcgacacgacgcgcag
cagctgcagcagctcaagcacctggagtccttttacgaaaaacctcctcctgggcttatc
aaggaagatgagactaagccagaagattgcataccagatgtaccaggcaatgaacacgcc
agggaatttctggctcatgcaccaactaaaggactttggatgccactggggaaagaagtc
aaagttatgcagtgttggcgttgcaaacgctatggtcaccgaacgggtgacaaagaatgc
cctttctttatcaaaggcaaccaaaagttagagcagttcagagtggcacatgaagatccc
atgtatgacatcatacgagacaataaacgacatgaaaaggacgtaaggatacagcagtta
aaacagttactggaggattctacctcagatgaagataggagcagctccagttcctctgaa
ggtaaagagaaacacaagaaaaagaagaagaaagaaaagcataagaaaaggaagaaagaa
aagaaaaagaagaaaaaacggaagcacaaatcttccaagtcaaatgagggttctgactca
gagtga

KEGG   Homo sapiens (human): 9128
Entry
9128              CDS       T01001                                 
Symbol
PRPF4, HPRP4, HPRP4P, PRP4, Prp4p, RP70, SNRNP60
Name
(RefSeq) pre-mRNA splicing tri-snRNP complex factor PRPF4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Network
nt06547  Spliceosome
  Element
N01969  U4/U6-U5 snRNP fomation
N01970  Spliceosome assembly (B complex formation)
N01971  spliceosome activation
Disease
H00527  Retinitis pigmentosa
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9128 (PRPF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    9128 (PRPF4)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    9128 (PRPF4)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 PRP4 WDR90_beta-prop_4th Beta-prop_EML NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT140_1st WD40_like WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 9128
NCBI-ProteinID: NP_004688
OMIM: 607795
HGNC: 17349
Ensembl: ENSG00000136875
UniProt: O43172
Structure
LinkDB
Position
9:113275658..113292905
AA seq 522 aa
MASSRASSTQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGI
EAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPIT
LFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLW
IANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFS
PNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCA
ADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILH
QEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGY
HIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHP
GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggcttcctcgcgagcctcttccacgcaggcaaccaaaactaaagcacccgacgactta
gttgctccggtcgtgaagaaaccacacatctattatggaagtttggaagagaaggagagg
gagcgtctggccaaaggagagtctgggattttggggaaagacggacttaaagcagggatc
gaagctggaaatattaatataacctctggagaagtgtttgaaattgaagagcatatcagc
gagcgacaggcagaagtattggctgagtttgagagaaggaagcgagcccggcagatcaat
gtttccacagatgactcagaggtcaaagcttgccttagagccttgggggaacccatcaca
ctttttggagagggtcctgctgaaagaagagaaaggttaagaaatatcctctcagttgtc
ggtactgatgccttgaaaaagaccaaaaaggatgatgagaagtctaaaaagtccaaagaa
gagtatcagcaaacctggtatcatgaaggaccaaatagcttgaaggtggcaagactatgg
attgctaattattcgttgcccagggcaatgaaacgcttggaagaggcccgactccataag
gagattcctgagacaacaaggacctcccagatgcaagagctgcacaagtctctccggtct
ttgaataatttttgcagtcagattggggatgatcggcctatctcctactgtcactttagt
cccaattccaagatgctggccacagcttgttggagtgggctttgcaagctctggtctgtt
cctgattgcaacctccttcacactcttcgagggcataacacaaatgtaggagcaattgta
ttccatcccaaatccactgtctccttggacccaaaagatgtcaacctggcctcttgtgcg
gctgatggctctgtgaagctttggagtctcgacagtgatgaaccagtggcagatattgaa
ggccatacagtgcgtgtggcgcgggtaatgtggcatccttcaggacgtttcctgggcacc
acctgctatgaccgttcatggcgcttatgggatttggaggctcaagaggagatcctgcat
caggaaggccatagcatgggtgtgtatgacattgccttccatcaagatggctctttggct
ggcactgggggactggatgcatttggtcgagtttgggacctacgcacaggacgttgtatc
atgttcttagaaggccacctgaaagaaatctatggaataaatttctcccccaatggctat
cacattgcaaccggcagtggtgacaacacctgcaaagtgtgggacctccgacagcggcgt
tgcgtctacaccatccctgctcatcagaacttagtgactggtgtcaagtttgagcctatc
catgggaacttcttgcttactggtgcctatgataacacagccaagatctggacgcaccca
ggctggtccccgctgaagactctggctggccacgaaggcaaagtgatgggcctagatatt
tcttccgatgggcagctcatagccacttgctcatatgacaggaccttcaagctgtggatg
gctgaatag

KEGG   Homo sapiens (human): 26121
Entry
26121             CDS       T01001                                 
Symbol
PRPF31, NY-BR-99, PRP31, RP11, SNRNP61
Name
(RefSeq) pre-mRNA processing factor 31
  KO
K12844  U4/U6 small nuclear ribonucleoprotein PRP31
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Network
nt06547  Spliceosome
  Element
N01969  U4/U6-U5 snRNP fomation
N01970  Spliceosome assembly (B complex formation)
N01971  spliceosome activation
Disease
H00527  Retinitis pigmentosa
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    26121 (PRPF31)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    26121 (PRPF31)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    26121 (PRPF31)
SSDB
Motif
Pfam: Nop Prp31_C VWA_CoxE Peptidase_S66
Other DBs
NCBI-GeneID: 26121
NCBI-ProteinID: NP_056444
OMIM: 606419
HGNC: 15446
Ensembl: ENSG00000105618
UniProt: Q8WWY3
Structure
LinkDB
Position
19:54115754..54131713
AA seq 499 aa
MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMF
AEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSK
RFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLS
EEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTN
LSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCT
LAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYR
KMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARI
SKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYF
SSMAEFLKVKGEKSGLMST
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgtctctggcagatgagctcttagctgatctcgaagaggcagcagaagaggaggaagga
ggaagctatggggaggaagaagaggagccagcgatcgaggatgtgcaggaggagacacag
ctggatctttccggggattcagtcaagaccatcgccaagctatgggatagtaagatgttt
gctgagattatgatgaagattgaggagtatatcagcaagcaagccaaagcttcagaagtg
atgggaccagtggaggccgcgcctgaataccgcgtcatcgtggatgccaacaacctgacc
gtggagatcgaaaacgagctgaacatcatccataagttcatccgggataagtactcaaag
agattccctgaactggagtccttggtccccaatgcactggattacatccgcacggtcaag
gagctgggcaacagcctggacaagtgcaagaacaatgagaacctgcagcagatcctcacc
aatgccaccatcatggtcgtcagcgtcaccgcctccaccacccaggggcagcagctgtcg
gaggaggagctggagcggctggaggaggcctgcgacatggcgctggagctgaacgcctcc
aagcaccgcatctacgagtatgtggagtcccggatgtccttcatcgcacccaacctgtcc
atcattatcggggcatccacggccgccaagatcatgggtgtggccggcggcctgaccaac
ctctccaagatgcccgcctgcaacatcatgctgctcggggcccagcgcaagacgctgtcg
ggcttctcgtctacctcagtgctgccccacaccggctacatctaccacagtgacatcgtg
cagtccctgccaccggatctgcggcggaaagcggcccggctggtggccgccaagtgcaca
ctggcagcccgtgtggacagtttccacgagagcacagaagggaaggtgggctacgaactg
aaggatgagatcgagcgcaaattcgacaagtggcaggagccgccgcctgtgaagcaggtg
aagccgctgcctgcgcccctggatggacagcggaagaagcgaggcggccgcaggtaccgc
aagatgaaggagcggctggggctgacggagatccggaagcaggccaaccgtatgagcttc
ggagagatcgaggaggacgcctaccaggaggacctgggattcagcctgggccacctgggc
aagtcgggcagtgggcgtgtgcggcagacacaggtaaacgaggccaccaaggccaggatc
tccaagacgctgcagcggaccctgcagaagcagagcgtcgtatatggcgggaagtccacc
atccgcgaccgctcctcgggcacggcctccagcgtggccttcaccccactccagggcctg
gagattgtgaacccacaggcggcagagaagaaggtggctgaggccaaccagaagtatttc
tccagcatggctgagttcctcaaggtcaagggcgagaagagtggccttatgtccacctga

DBGET integrated database retrieval system