Homo sapiens (human): 9785
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Entry
9785 CDS
T01001
Symbol
DHX38, DDX38, PRP16, PRPF16, RP84
Name
(RefSeq) DEAH-box helicase 38
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
hsa
Homo sapiens (human)
Pathway
hsa03040
Spliceosome
Disease
H00527
Retinitis pigmentosa
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9785 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsa03041
]
9785 (DHX38)
Enzymes [BR:
hsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9785 (DHX38)
Spliceosome [BR:
hsa03041
]
Complex C
Other components
Step II factors
9785 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
AAA_30
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
9785
NCBI-ProteinID:
NP_054722
OMIM:
605584
HGNC:
17211
Ensembl:
ENSG00000140829
UniProt:
Q92620
Structure
PDB
LinkDB
All DBs
Position
16:72093847..72112912
Genome browser
AA seq
1227 aa
AA seq
DB search
MGDTSEDASIHRLEGTDLDCQVGGLICKSKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGGDQAGQNIRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSS
RSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYR
DSERSHRLSTRDRDRSVRGKYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKAVTEDGKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaccagtgaggatgcctcgatccatcgattggaaggcactgatctggactgt
caggttggtggtcttatttgcaagtccaaaagtgcggccagcgagcagcatgtcttcaag
gctcctgctccccgcccttcattactcggactggacttgctggcttccctgaaacggaga
gagcgagaggagaaggacgatggggaggacaagaagaagtccaaagtctcctcctacaag
gactgggaagagagcaaggatgaccagaaggatgctgaggaagagggcggtgaccaggct
ggccaaaatatccggaaagacagacattatcggtctgctcgggtagagactccatcccat
ccgggtggtgtgagcgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gaacatggtgtctatgcctcgtccaaagaagaaaaggattggaagaaggagaaatcgcgg
gatcgagactatgaccgcaagagggacagagatgagcgggatagaagtaggcacagcagc
agatcagagcgagatggagggtcagagcgtagcagcagaagaaatgaacccgagagccca
cgacatcgacctaaagatgcagccaccccttcaaggtctacctgggaggaagaggacagt
ggctatggctcctcaaggcgctcacagtgggaatcgccctccccgacgccttcctatcgg
gattctgagcggagccatcggctgtccactcgagatcgagacaggtctgtgaggggcaag
tactcggatgacacgcctctgccaactccctcctacaaatataacgagtgggccgatgac
agaagacacttggggtccaccccgcgtctgtccaggggccgaggaagacgtgaggagggc
gaagaaggaatttcatttgacacggaggaggagcggcagcagtgggaagatgaccagagg
caagccgatcgggattggtacatgatggacgagggctatgacgagttccacaacccgctg
gcctactcctccgaggactacgtgaggaggcgggagcagcacctgcataaacagaagcag
aagcgcatttcagctcagcggagacagatcaatgaggataacgagcgctgggagacaaac
cgcatgctcaccagtggggtggtccatcggctggaggtggatgaggactttgaagaggac
aacgcggccaaggtgcatctgatggtgcacaatctggtgcctccctttctggatgggcgc
attgtcttcaccaagcagccggagccggtgattccagtgaaggatgctacttctgacctg
gccatcattgctcggaaaggcagccagacagtgcggaagcacagggagcagaaggagcgc
aagaaggctcagcacaaacactgggaactggcggggaccaaactgggagatataatgggc
gtcaagaaggaggaagagccagataaagctgtgacggaggatgggaaggtggactacagg
acagagcagaagtttgcagatcacatgaagagaaagagcgaagccagcagtgaatttgca
aagaagaagtccatcctggagcagaggcagtacctgcccatctttgcagtgcagcaggag
ctgctcactattatcagagacaacagcatcgtgatcgtggttggggagacggggagtggt
aagaccactcagctgacgcagtacctgcatgaagatggttacacggactatgggatgatt
gggtgtacccagccccggcgtgtagctgccatgtcagtggccaagagagtcagtgaagag
atggggggaaaccttggcgaggaggtgggctatgccatccgctttgaagactgcacttca
gagaacaccttgatcaaatacatgactgacgggatcctgctccgagagtccctccgggaa
gccgacctggatcactacagtgccatcatcatggacgaggcccacgagcgctccctcaac
actgacgtgctctttgggctgctccgggaggtagtggctcggcgctcagacctgaagctc
atcgtcacatcagccacgatggatgcggagaagtttgctgccttttttgggaatgtcccc
atcttccacatccctggccgtaccttccctgttgacatcctcttcagcaagaccccacag
gaggattacgtggaggctgcagtgaagcagtccttgcaggtgcacctgtcgggggcccct
ggagacatccttatcttcatgcctggccaagaggacattgaggtgacctcagaccagatt
gtggagcatctggaggaactggagaacgcgcctgccctggctgtgctgcccatctactct
cagctgccttctgacctccaggccaaaatcttccagaaggctccagatggcgttcggaag
tgcatcgttgccaccaatattgccgagacgtctctcactgttgacggcatcatgtttgtt
atcgattctggttattgcaaattaaaggtcttcaaccccaggattggcatggatgctctg
cagatctatcccattagccaggccaatgccaaccagcggtcagggcgagccggcaggacg
ggcccaggtcagtgtttcaggctctacacccagagcgcctacaagaatgagctcctgacc
accacagtgcccgagatccagaggactaacctggccaacgtggtgctgctgctcaagtcc
ctcggggtgcaggacctgctgcagttccacttcatggacccgcccccggaggacaacatg
ctcaactctatgtatcagctctggatcctcggggccctggacaacacaggtggtctgacc
tctaccgggcggctgatggtggagttcccgctggaccctgccctgtccaagatgctcatc
gtgtcctgtgacatgggctgcagctccgagatcctgctcatcgtttccatgctctcggtc
ccagccatcttctacaggcccaagggtcgagaggaggagagtgatcaaatccgggagaag
ttcgctgttcctgagagcgatcatttgacctacctgaatgtttacctgcagtggaagaac
aataattactccaccatctggtgtaacgatcatttcatccatgctaaggccatgcggaag
gtccgggaggtgcgagctcaactcaaggacatcatggtgcagcagcggatgagcctggcc
tcgtgtggcactgactgggacatcgtcaggaagtgcatctgtgctgcctatttccaccaa
gcagccaagctcaagggaatcggggagtacgtgaacatccgcacagggatgccctgccac
ttgcaccccaccagctccctttttggaatgggctacaccccagattacatagtgtatcac
gagttggtcatgaccaccaaggagtatatgcagtgtgtgaccgctgtggacggggagtgg
ctggcggagctgggccccatgttctatagcgtgaaacaggcgggcaagtcacggcaggag
aaccgtcgtcgggccaaagaggaagcctctgccatggaggaggagatggcgctggccgag
gagcagctgcgagcccggcggcaggagcaggagaagcgcagccccctgggcagtgtcagg
tctacgaagatctacactccaggccggaaagagcaaggggagcccatgacccctcgccgc
acgccagcccgctttggtctgtga
DBGET
integrated database retrieval system
