Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101957438
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Entry
101957438 CDS
T10664
Symbol
Mmp1
Name
(RefSeq) interstitial collagenase
KO
K01388
matrix metalloproteinase-1 (interstitial collagenase) [EC:
3.4.24.7
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03320
PPAR signaling pathway
iti04657
IL-17 signaling pathway
iti04926
Relaxin signaling pathway
iti05171
Coronavirus disease - COVID-19
iti05200
Pathways in cancer
iti05219
Bladder cancer
iti05323
Rheumatoid arthritis
iti05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09150 Organismal Systems
09151 Immune system
04657 IL-17 signaling pathway
101957438 (Mmp1)
09152 Endocrine system
03320 PPAR signaling pathway
101957438 (Mmp1)
04926 Relaxin signaling pathway
101957438 (Mmp1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101957438 (Mmp1)
09162 Cancer: specific types
05219 Bladder cancer
101957438 (Mmp1)
09172 Infectious disease: viral
05171 Coronavirus disease - COVID-19
101957438 (Mmp1)
09163 Immune disease
05323 Rheumatoid arthritis
101957438 (Mmp1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
101957438 (Mmp1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
iti01002
]
101957438 (Mmp1)
Enzymes [BR:
iti01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.7 interstitial collagenase
101957438 (Mmp1)
Peptidases and inhibitors [BR:
iti01002
]
Metallo peptidases
Family M10
101957438 (Mmp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Reprolysin_5
Reprolysin_3
Reprolysin_4
Peptidase_M66
DUF4953
Metallopep
Motif
Other DBs
NCBI-GeneID:
101957438
NCBI-ProteinID:
XP_005329153
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MLCFSLLLLLLWDVGSHGFPASVETQQQDVEIVQKYLENYYNLKNERQIEKQRSSSSVVE
KLKEMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVARFVLTQGNPRWEKTHLTYRIENYT
PDLSREDVDHAIEKAFQLWSNVSPLTFTKIFEGQADIMISFVRGDHRDNSPFDGPGGNLA
HAFQPGPGIGGDAHFDEDERWTKNFRDYNLYRVAAHELGHSLGLAHSTDIGALMYPNYIF
SGDVQLAQDDIDGIQAIYGSSPNPTQATGPQTPEVCDSKLTFDAITTIRGELMFFKDRFY
MRANSLYPVELNFISVFWPHLPNGLEAAYELADRDEVRFFKGNKYWAVQGQDVLRGYPKD
IYSSFGFPRTVKHIDAAVSEEDTGKTYFFVDNKCWRYDEYKRSMDAGYPKMIFHDFPGIG
NKVDAVFKKDGFFYIFHGTRQYKFDPKTKRILTLQKANSWFNCRKN
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgctctgcttttctctgctgctgctactgctctgggacgtggggtctcatggtttccca
gcatctgtagaaacacaacagcaggatgtggagatagtccagaaatacctggaaaactac
tacaatttgaagaatgagagacaaattgaaaagcagagaagcagtagttcagtggtggaa
aagctgaaggaaatgcaggaattctttggactgaaagtgactggaaagccagatgctgaa
accctgaaggtgatgaagcagcccagatgtggggtgcctgatgtggctcggtttgtcctc
actcaggggaaccctcgttgggagaaaacacacctgacctacaggattgaaaattacaca
ccagatttgtcaagagaagatgtggaccatgccattgaaaaagcctttcaactttggagt
aatgtctcaccactgacattcaccaaaatctttgagggccaagcagacataatgatttcc
tttgtcagaggagaccatcgtgacaattctccctttgatggacctggaggaaacctcgct
cacgccttccaaccaggcccaggtattggaggagatgctcattttgatgaagatgaaagg
tggaccaaaaacttcagagattacaacttgtatcgtgttgcggctcatgaattaggccat
tctcttggactcgctcattctactgatattggagctttaatgtaccccaactacatcttc
agtggtgatgttcagcttgctcaggatgacatcgatggcattcaagccatatacggatct
tccccaaatcccacccaggcaacaggcccacaaaccccagaagtgtgtgatagtaagcta
acctttgatgccataactacaattcggggagaactgatgttctttaaagacagattctac
atgcgtgcaaattccttgtacccagttgagctcaatttcatttctgttttctggccacat
ctgccaaatggacttgaagcggcttatgaacttgctgatagggatgaagtcaggtttttc
aaaggaaataagtactgggctgttcaggggcaggatgtgcttcgtggataccccaaggac
atctacagttcctttggcttccctcgaactgtgaagcatattgatgctgctgtttcagag
gaagacactggaaaaacctacttctttgtcgataacaagtgctggagatatgatgagtat
aaacgatccatggatgcaggttatcctaaaatgatatttcacgactttcctggaattggc
aataaagttgatgctgttttcaagaaagatggatttttctatatcttccatggaacaaga
caatacaaatttgatcctaaaacaaagcgaattttgactctccagaaagccaacagctgg
ttcaactgcagaaaaaattga
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