KEGG   PATHWAY: kpas03430
Entry
kpas03430                   Pathway                                
Name
Mismatch repair - Klebsiella pasteurii
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
kpas03430  Mismatch repair
kpas03430

Other DBs
GO: 0006298
Organism
Klebsiella pasteurii [GN:kpas]
Gene
LUW96_01070  mutS; DNA mismatch repair protein MutS [KO:K03555]
LUW96_01725  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
LUW96_02260  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
LUW96_04625  dam; adenine-specific DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
LUW96_05950  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
LUW96_06515  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LUW96_07680  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
LUW96_08495  ssb1; single-stranded DNA-binding protein SSB1 [KO:K03111]
LUW96_09010  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
LUW96_09525  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
LUW96_10535  [KO:K02344] [EC:2.7.7.7]
LUW96_11720  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LUW96_11890  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LUW96_12865  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
LUW96_13360  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LUW96_13795  [KO:K02345] [EC:2.7.7.7]
LUW96_14955  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
LUW96_17955  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
LUW96_24435  [KO:K02345] [EC:2.7.7.7]
LUW96_24440  exoX; exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
LUW96_25220  [KO:K03657] [EC:5.6.2.4]
LUW96_25445  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
LUW96_27485  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
LUW96_27900  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
LUW96_29245  ssb; single-stranded DNA-binding protein [KO:K03111]
LUW96_29600  [KO:K02342] [EC:2.7.7.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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