KEGG   PATHWAY: lcat03030
Entry
lcat03030                   Pathway                                
Name
DNA replication - Lemur catta (Ring-tailed lemur)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lcat03030  DNA replication
lcat03030

Organism
Lemur catta (Ring-tailed lemur) [GN:lcat]
Gene
123620681  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
123622577  PCNA; proliferating cell nuclear antigen [KO:K04802]
123623781  POLD1; DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
123623880  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
123625602  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
123625732  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
123626171  RFC5; replication factor C subunit 5 [KO:K10756]
123630370  RFC4; replication factor C subunit 4 [KO:K10755]
123631606  MCM7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
123632611  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
123632941  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
123632974  PRIM2; DNA primase large subunit [KO:K02685]
123634320  RPA2; replication protein A 32 kDa subunit [KO:K10739]
123636568  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
123637097  POLE4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
123637235  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
123637371  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
123639319  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
123639634  PRIM1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
123641038  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
123641265  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
123641352  RNASEH2C; ribonuclease H2 subunit C isoform X1 [KO:K10745]
123641377  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
123642859  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
123643640  MCM6; DNA replication licensing factor MCM6 isoform X1 [KO:K02542] [EC:5.6.2.3]
123644555  MCM4; DNA replication licensing factor MCM4 isoform X1 [KO:K02212] [EC:5.6.2.3]
123646507  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
123647230  RPA3; replication protein A 14 kDa subunit [KO:K10740]
123647603  POLD2; LOW QUALITY PROTEIN: DNA polymerase delta subunit 2 [KO:K02328]
123647641  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
123648914  RFC3; replication factor C subunit 3 [KO:K10756]
123649470  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
123649593  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
123650418  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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