Lates calcarifer (barramundi perch): 108888136
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Entry
108888136 CDS
T04895
Symbol
adam17a
Name
(RefSeq) disintegrin and metalloproteinase domain-containing protein 17a isoform X1
KO
K06059
disintegrin and metalloproteinase domain-containing protein 17 [EC:
3.4.24.86
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04148
Efferocytosis
lcf04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108888136 (adam17a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108888136 (adam17a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108888136 (adam17a)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lcf04090
]
108888136 (adam17a)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.86 ADAM 17 endopeptidase
108888136 (adam17a)
Peptidases and inhibitors [BR:
lcf01002
]
Metallo peptidases
Family M12: astacin/adamalysin family
108888136 (adam17a)
CD molecules [BR:
lcf04090
]
Proteins
108888136 (adam17a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Reprolysin_2
Reprolysin_5
ADAM17_MPD
Disintegrin
Reprolysin_3
Reprolysin_4
Pep_M12B_propep
Motif
Other DBs
NCBI-GeneID:
108888136
NCBI-ProteinID:
XP_018539485
UniProt:
A0AAJ7PV33
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All DBs
Position
LG19:12501894..12515494
Genome browser
AA seq
868 aa
AA seq
DB search
MRNILLIAFLAPCWVNGAIKSRVTTEEIHEENPEFETLNNVLSDYEVLPLSGLQLHSVRK
RDVHTQSHLERLVSFRALHRNFKLYLTTNTDLFTDNFKAVFIDKHGKEENYDVQLQNYFT
GHVVGEENSRVQAHIDGDEFSAHILTDEAEYNVEPLWRFTDSPTDGRLLVYRSEDIKNLS
RIASPKVCGYVHAEDMDLLPQTARRDWDRQEVDQQNENHQREKRQVHDHRKNTCPLLLVA
DYRFFRHMGRRQESVTLNYLIELIDRVDDIYRNTTWDDEFKGYGVQIHQIIINKEPTNPP
PGHAGSTWIHYNMEDSPVSGKKVWDVKRLLEQFSSDIADNASIVCLAHLFTYQDFDEGTL
GLAYVAPSKAQALGGLCPRPYYPSHSVKKPSYLNTGLTSTMNYGKTILTKEADLVTTHEL
GHNFGAEHDPDNIPYCAPSDDQGGKFVMYPIAVSGDHVNNKRFSNCSKISIGKTLRSKAP
LCFKERNSKVCGNSRVEEGEECDPGLLHLYDDLCCTADCKFKRDAQCSDRNSPCCRNCKF
ERAGVMCQEAINATCKNTSSCTGTSSECPPPAKAADNTVCVDNGLCRKGECNPFCEATQN
LQSCACNETEHSCKVCCRGKDGTCSPFIQTNGSFLFLRKGKPCTVGFCDESGKCMKQVQD
VIERLWDFIDKLDINTFGKFLADNIVGSVVVFSLVFWIPLSILVHCVDKRLDQQYEENTK
SFYYPPSNQEMLSNLESASVRIVKPPQPPSSSGGRTVPSSLPPPQLHQLSQVGAPPTASS
SSSTQAPGPSYVPTPDSAGGPRMATIQEDTSSDSHLGEEGLSDDFTTAGACSSATKSSYE
DLTEQNLPARDRRRLKRQDCIDTKETEC
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacatactgttaatagcatttctggctccttgttgggtcaacggtgccattaag
tcaagagttactactgaggagatccacgaagaaaacccggagttcgaaactctaaacaac
gtcctgtcggactatgaggtactgccattgtcaggcctccagttgcactctgtaaggaag
agggacgtccacacccagtcccacctggagcgcctcgtgagcttcagagccctgcacagg
aatttcaaactttacttgaccaccaacacagaccttttcactgacaacttcaaagctgtg
ttcattgataaacatggaaaggaggagaactatgatgttcagcttcagaactattttact
ggacatgttgttggagaggagaattcacgtgtgcaggcacacatagatggagatgagttt
tctgctcatattctaactgatgaagctgagtacaatgtagagcccctgtggaggtttact
gactcccccactgatggcaggttgctggtttatcgctccgaggacatcaagaatctcagc
cgcatcgcctctccaaaagtgtgcggttatgtccatgcggaggacatggacctactacca
cagactgccaggagggattgggacaggcaggaggtggaccagcaaaatgaaaaccaccag
agagagaaaagacaggtccacgaccacaggaagaatacctgccccttgctgctggtggca
gattaccgcttctttagacacatgggccgcagacaagagagtgtcactctcaactacctg
attgagctgattgatcgagttgatgacatttataggaacacaacctgggatgatgaattc
aaaggctatggggttcaaatccatcagatcatcatcaacaaggagcctacgaatcctccc
ccgggccatgctggctccacctggatccactataacatggaggacagccctgtgagtgga
aaaaaggtctgggatgtgaagagacttctggagcaattcagctccgacatcgctgacaat
gcctccattgtgtgtctggcccacctattcacctaccaggattttgatgaaggcacactg
ggtctggcctatgtggccccatccaaagctcaggccctgggcggcctctgccccagacct
tattacccatctcactctgtgaagaaacccagttacctcaacacaggcttgaccagcacc
atgaactacggcaaaaccatcctcacaaaggaagccgatttggtgaccactcatgagctg
ggccataactttggagcagagcatgaccccgacaacatcccttattgtgctcccagtgac
gaccaagggggaaagttcgtcatgtaccctattgctgtgagcggagaccatgtcaacaac
aagcgtttctccaactgtagcaagatctccattggaaagacattacgttccaaggcccca
ctttgcttcaaggagaggaacagtaaagtatgtggaaactccagagtggaggaaggggag
gagtgcgaccctgggctcctccatctctatgatgacctctgctgcacagccgactgcaag
ttcaagcgtgatgcacagtgcagtgacagaaacagcccttgctgtagaaattgcaagttt
gagcgggctggagtaatgtgccaggaagccataaatgctacctgcaagaacacatcctcc
tgcacgggcaccagcagtgaatgtccacctcctgcaaaggcagctgacaacactgtgtgc
gttgacaacggcttgtgtcgcaaaggagagtgcaaccctttctgcgaagccacacagaac
cttcagtcctgtgcctgtaatgaaactgaacactcctgtaaagtgtgctgcaggggaaaa
gatggcacctgctctcccttcatccagaccaatggcagtttccttttccttcgcaaagga
aaaccgtgcactgtgggcttctgtgacgagagcgggaagtgcatgaagcaggtgcaggac
gtgatagagaggctgtgggattttatcgacaagctggacattaacacgtttgggaagttc
ctggctgataacatagtgggctcagtcgtggtgttttccctcgtcttctggattcctctc
agtatcctggttcactgtgtggacaaacgccttgatcagcagtatgaggagaacacaaag
tccttctactaccctccaagtaatcaagaaatgctaagcaacctcgagtcagcatccgtg
cgcatcgtcaagcctcctcagcctccctcctcctccggcggccggaccgtgccctcctcc
ctgcccccaccgcagcttcatcagctgagccaggtcggggcccctcccacagccagcagc
agcagcagtacccaggcccccggcccgagctacgtccccaccccggacagcgcagggggg
ccacggatggccaccatccaggaggacaccagcagcgactctcacctgggagaggagggc
ctgtcggacgatttcacaaccgcaggagcctgctcgtcggctacgaaatcctcctacgag
gatctgacagaacagaacctgccagccagggaccggcggcgcctcaagaggcaggactgc
attgacacgaaagagaccgagtgctga
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