Schleiferilactobacillus harbinensis: D1010_11725
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Entry
D1010_11725 CDS
T06855
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lhb
Schleiferilactobacillus harbinensis
Pathway
lhb03030
DNA replication
lhb03410
Base excision repair
lhb03420
Nucleotide excision repair
lhb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lhb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1010_11725 (ligA)
03410 Base excision repair
D1010_11725 (ligA)
03420 Nucleotide excision repair
D1010_11725 (ligA)
03430 Mismatch repair
D1010_11725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhb03032
]
D1010_11725 (ligA)
03400 DNA repair and recombination proteins [BR:
lhb03400
]
D1010_11725 (ligA)
Enzymes [BR:
lhb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D1010_11725 (ligA)
DNA replication proteins [BR:
lhb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1010_11725 (ligA)
DNA repair and recombination proteins [BR:
lhb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D1010_11725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1010_11725 (ligA)
MMR (mismatch excision repair)
DNA ligase
D1010_11725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D1010_11725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
GT4-conflict
Zn_ribbon_NUD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QFR24013
UniProt:
A0A5P8M6A3
LinkDB
All DBs
Position
complement(2263521..2265566)
Genome browser
AA seq
681 aa
AA seq
DB search
MTLPKPLDQYDETSAAAALKKLRAQVNQYREAYYTKDQPLVEDYVYDTAYNDLQALEKKF
PQLITPDSPTQLVGDETLPGFTKVRHDIPMLSMGDVFSVDELKTFDDRLQGSVGSAVTYN
AELKIDGLALSLVYQGGKLTQASTRGDGIIGEDVTANIKTIKAVPRTLPRPIDVEVRGEC
YMPVSSFAKLNEDREQRGEAVFANPRNAAAGSLRQLNPRITRERDLSVWLYTIVNAQDYG
ITTQADALRTLSEWGFPVNPNSRVCRTLTDVDHYITDMTPQRQTLDYGIDGIVLKVNDLD
LQAQLGNTVKVPRWEIAYKFPPEMARTIVREITWTVGRTGVVTPTAVMDPVQLAGTTVSR
ATLHNVDMLKEKDIRIGDTVELFKAGDIIPEVSRVVTEKRPADAAPYQPPTACPSCGQPL
VHLMDEVALRCVNPKCPAQITEGLTHFASRDAMDITGLGPKVVALLYSHKLVSDIADLYR
LTAADLADLPGFKEKSISNLLNAIAGSRQNSLERLLFGLGINHVGAKAAQLIAQAFGTMD
KIMAASADEITAIKTIGPTIGQSITAFVSNPGAQSLINELAAVGVNMTYTGPAAEAEAAA
DSPFNGQTVVITGKFADFSRKGLTDQLTALGAHVTGSVSKKTTMVVAGEDPGSKADKAQQ
LGVQIIDADQLAAMLKESQTE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgactttacctaaaccgttagaccaatatgatgaaaccagtgcggcggcggcattgaag
aaactgcgggcccaagtcaatcagtaccgggaagcttattacaccaaggatcagcccctg
gtggaagactacgtgtacgatacggcatacaacgatttgcaggctttagagaaaaagttt
cctcagctgatcacgccggattctcccacccaattggtgggagatgaaacactgcccggt
tttaccaaggtccgccacgatattcccatgctgtccatgggcgacgtcttttctgtcgac
gaactcaagactttcgatgatcgcctgcagggcagcgtcgggtcagccgtgacctataat
gcagaattaaagatcgatgggctcgctctttccttggtgtatcagggcggcaaactgacc
caagcgtcgacgcgcggcgatgggatcatcggcgaagatgtgaccgctaatatcaagacg
atcaaggccgtaccgcggacgctgccccggccgattgatgtagaagtccggggcgaatgt
tacatgcccgtgtcgtcttttgctaagctcaatgaagaccgggaacagcggggcgaggca
gtttttgccaacccccgcaacgctgcagcaggctctttgcgtcagctcaatcctcggatc
acccgcgagcgggatttatccgtctggctgtacaccatcgttaatgcccaggactatggc
attaccacccaggcagacgcgctgcggactctgagcgagtgggggttcccggtgaatcct
aacagtcgggtctgtcgtaccttgaccgatgtggaccattacatcacggatatgacgccg
cagcgccagacattggattacggcattgacgggatcgttttgaaggtgaatgatcttgac
ttgcaagcacaactgggtaatacggtgaaggtcccccgatgggaaattgcctataagttc
ccaccagagatggcccgaactatcgtgcgggagatcacttggacggtgggccgtaccggc
gtggtaacgcccactgccgtgatggatccggtgcagctggccgggaccacggtcagccgg
gcgacgctgcataatgtggatatgctgaaagaaaaggatatccgaattggggataccgtt
gagctgttcaaggctggcgatatcatccccgaagtctcgcgcgtggtgaccgaaaaacgg
cccgcggacgcggcgccgtaccagccgccgacggcctgtccatcctgcggccagccgctg
gtccatttaatggatgaagtggcactgcgctgtgtgaatccgaaatgtccggcccaaatt
acggaggggctgacccactttgcctcccgagatgccatggatatcacggggcttgggcct
aaagtggtggcgctgctgtattctcacaaattagtcagtgacattgctgatttgtaccgg
ttaacagcagccgatctggctgatctgcccggttttaaggaaaagtccattagcaatttg
ttaaatgccatcgctgggagtcgacagaactctctggaacggttattgtttgggttaggg
atcaaccatgtgggtgccaaagccgctcaactgattgcccaggcctttggtaccatggat
aaaatcatggcggccagtgccgatgagattacggccattaaaacaattggcccgacgatc
gggcaaagcatcactgctttcgtcagtaatccgggggcgcaaagcttgatcaacgagctg
gcagccgtcggcgtgaatatgacttataccggtccggccgctgaagcggaggctgccgcc
gactcgccgtttaacggtcagacggtggtgattaccggtaagttcgctgatttctcccgc
aagggcttaacggatcagctgactgctttaggcgctcatgtgaccggttcggtatcaaaa
aagaccacgatggtcgtggccggggaggaccccggcagcaaagcagacaaggcccagcag
ttaggggtccaaatcattgacgccgatcaattagcagcaatgttaaaggaaagtcaaaca
gaataa
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