Lactococcus petauri: lgb_00305
Help
Entry
lgb_00305 CDS
T08464
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lpet
Lactococcus petauri
Pathway
lpet03030
DNA replication
lpet03410
Base excision repair
lpet03420
Nucleotide excision repair
lpet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
lgb_00305 (ligA)
03410 Base excision repair
lgb_00305 (ligA)
03420 Nucleotide excision repair
lgb_00305 (ligA)
03430 Mismatch repair
lgb_00305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpet03032
]
lgb_00305 (ligA)
03400 DNA repair and recombination proteins [BR:
lpet03400
]
lgb_00305 (ligA)
Enzymes [BR:
lpet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
lgb_00305 (ligA)
DNA replication proteins [BR:
lpet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
lgb_00305 (ligA)
DNA repair and recombination proteins [BR:
lpet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
lgb_00305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
lgb_00305 (ligA)
MMR (mismatch excision repair)
DNA ligase
lgb_00305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
lgb_00305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
UPF0758_N
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UQU59549
LinkDB
All DBs
Position
311082..313049
Genome browser
AA seq
655 aa
AA seq
DB search
MNIESKIKDLTELLNKYAHEYYTLDMPSVEDAEYDRLYRELETLEHDNPHLIRADSPTHR
TGDVVLSGFEKYTHEYNLYSLADAFSREELEDFDERVRKVIPKPEYICELKIDGLSLSLK
YTAGKLVVAATRGDGSVGENITENVKRIKDVPLVLKEPIDIVVRGEAYLPRKNFVKLNKE
RELEGKPSFANPRNAAAGTLRQLDTKEVTKRGLATFLYQEASPATNDTQEEVLEYLEKLG
LVVNKERVFARNIDEVCAFIERVASLRDDLDYDIDGVVIKVNNLAEQEELGFTVKAPRWA
IAYKFPAELAETEILSVDWTVGRTGVVTPTANMVPVTLAQTTVSRATLHNVDYIKEKDIR
LKDKVMIYKAGDIIPAVQRVLFEKRPADSVEMAIPQYCPECSSELLHFEDEVALRCINPL
CPAQNREKLIHFASRGAMNISGLGQSIVTQLFKNNLIKDVADIYKLQLDELVALDKIQEK
SATKLLNAIEASKENSAEKLLFGLGIRHVGSKAAKLLMERFGNLRALSQASLEEIAEIPS
LGSVIAKAVTSYFATEGAQVLLQELAEAGVNFDYLGLKPKTDSVLSGKTVVLTGKLIAMT
RTEAKEKLEALGANVSGSVSKKTDLVIAGADAGSKLAKAQDLGIEVWSEEELLKL
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgagtcaaagatcaaagatttaacggagttattaaataagtacgctcacgaa
tactataccttggatatgccatcggttgaagatgcggagtatgatcgcctttatcgtgag
ttagaaactctagaacacgataacccacatttgatacgcgctgattcaccgacccatcgt
acaggcgatgttgtgctatcaggatttgaaaaatatactcatgaatacaatctctacagc
ctagcagatgctttttcacgtgaagagctggaagactttgatgaacgtgtacgtaaagtc
attccaaagcctgagtacatttgtgagttaaaaattgatggtctctcactttctcttaaa
tatacagcaggtaaacttgtcgtagctgcgacacgtggagatggcagtgtaggggaaaac
attacagaaaatgttaaacgcatcaaagacgtcccactggtattaaaagaacctattgac
attgtggtgcgaggtgaagcttatttgccacgcaaaaatttcgtcaaactcaataaggaa
cgcgaacttgaaggtaaaccttcctttgccaacccgcgtaatgcagcagccggaacttta
cgacagttagatacgaaagaggtgaccaagcgtggcttggcaaccttcctttatcaagaa
gcgagtcctgcgacaaatgacactcaagaagaagttttggagtacttagaaaagcttgga
cttgtcgtcaacaaagaacgtgtttttgcgcgaaatattgatgaagtctgtgccttcatt
gagcgcgtggcttctcttcgggatgacttagactatgatattgatggtgttgtcatcaaa
gttaataatctagctgaacaagaagagttaggctttacagtcaaggctccacgttgggcc
atcgcttataaatttccagctgagctggcagaaacggaaatcctgtctgtggattggaca
gtagggcgtacaggggtcgttacaccaacagcaaatatggttcctgtgaccttagcgcag
acgacagtatcacgcgccacactgcataatgttgactacattaaggagaaggatatccgt
cttaaagacaaagtcatgatctataaggcaggggatatcattccagcagttcaacgtgtt
ttgtttgagaaacgtccagcagattctgtagaaatggcaatccctcaatattgtccggaa
tgttcatctgaacttttgcatttcgaagatgaagtagccttacgctgtatcaatccgctt
tgtccagcacaaaatcgtgaaaaacttattcactttgccagtcgtggtgcaatgaatatt
tctggtttggggcaatcgatagttacgcaacttttcaaaaataacttaatcaaagatgtg
gcagatatctataagttgcagcttgacgaattagtggcactggataagattcaagaaaaa
tcagcaaccaagttattaaatgccattgaagcctcaaaagaaaactccgcagaaaagctc
ctttttggcttgggtattcgtcatgtaggatcgaaagctgccaaactattaatggagcgt
tttggtaatcttcgggccttgtcgcaagcaagcttagaagaaattgctgaaattccaagc
ttaggttcagttattgccaaagctgtaaccagctactttgccacagaaggtgcgcaagtc
ttgcttcaagaattggcagaagcgggagtcaacttcgactatcttggtcttaagcccaag
acagacagtgtgttgtcagggaaaaccgttgttttaacagggaaattaatagctatgaca
cgaacagaggcaaaagaaaaattagaagctttaggtgcaaatgtctcaggttcagtttct
aaaaagacagatttagttatagctggagcagatgctgggtcaaaactggctaaagcacag
gatttgggcattgaagtttggtcagaagaggagttgctgaaattatga
DBGET
integrated database retrieval system
