Pseudolactococcus raffinolactis: CMV25_08470
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Entry
CMV25_08470 CDS
T05231
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lrn
Pseudolactococcus raffinolactis
Pathway
lrn03030
DNA replication
lrn03410
Base excision repair
lrn03420
Nucleotide excision repair
lrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMV25_08470 (ligA)
03410 Base excision repair
CMV25_08470 (ligA)
03420 Nucleotide excision repair
CMV25_08470 (ligA)
03430 Mismatch repair
CMV25_08470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrn03032
]
CMV25_08470 (ligA)
03400 DNA repair and recombination proteins [BR:
lrn03400
]
CMV25_08470 (ligA)
Enzymes [BR:
lrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CMV25_08470 (ligA)
DNA replication proteins [BR:
lrn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CMV25_08470 (ligA)
DNA repair and recombination proteins [BR:
lrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CMV25_08470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CMV25_08470 (ligA)
MMR (mismatch excision repair)
DNA ligase
CMV25_08470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CMV25_08470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
tRNA-synt_1c
DUF819
RNA_lig_T4_1
HHH_3
DUF1889
Motif
Other DBs
NCBI-ProteinID:
ATC61911
LinkDB
All DBs
Position
1713397..1715364
Genome browser
AA seq
655 aa
AA seq
DB search
MNAELKIKTLTEQLNQYAHAYYTLDNPVVEDAEYDRLYRELVTLEAENPNLVRADSPTHR
TGDVVLSGFKKYTHDYQLYSLQDAFSKEELEAFDARVRKEIPAPEYICELKIDGLSLSLV
YVNGVLETAATRGDGSIGEDITEQVKRIKDVPLVLSEPIDIVVRGEAYLPRRNFEKLNLE
REEEGLPSFANPRNAAAGTLRQLDTKVVAKRGLATFLYQEASPATNDTQEEVLNYLEKLG
LVVNDQRAFATNITEIWAFIEKVAAMRDTLAYDIDGVVIKVNQLAQQNTLGFTVKFPKWA
IAYKFPAELAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIKEKDIR
LGDKVVIYKAGDIIPAVQRVLLDKRPSDSVVLDIPKYCPECESDLLHFEDEVALRCVNPL
CPAQIREKLIHFASRGAMNITGLGIAVVTQLFDKKLISDVADLYQLTIDDLLKLDKVKEK
SAEKLYQAIQASKENSVEKLIFGLGIRHVGSKAAKIIAENLSNLTNISTASTETLSAIPT
IGTVLAESLTKYFALEGTKKLLAELQAVGVNFDYLGPVKRDDAPLSGKTVVLTGKLAQLT
RTEAKEKLENLGANVSGSVSKKTDIVVAGSDAGSKLTKAQDLGIEIWTEEELIKL
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgaattaaaaatcaaaacattaactgaacaacttaatcaatatgcacatgca
tactatacattagataatccagtcgtcgaagatgctgaatacgatcgtctttaccgtgaa
ctcgtcacattggaagctgaaaatccaaacctggttcgagctgactcaccaactcataga
accggtgatgtcgtcctttcaggctttaaaaagtacacccacgactatcagctttacagc
ttgcaagatgctttttcaaaagaagagcttgaagcttttgacgcccgtgtacgcaaagaa
attccagcacctgaatatatttgtgaactcaaaattgacggtctttctctatctctagtt
tatgtcaatggtgtcctggaaactgcggcaacacgtggagatggcagtatcggagaggac
atcacagaacaggttaaacggatcaaggatgtgcctttagtcttgagcgaacccattgat
atcgtggtgagaggcgaagcctacttgcctcgtcgcaacttcgaaaagttaaatttagaa
cgtgaagaagaagggttgccgtcatttgccaatccgcgtaatgcagcagccggcacgtta
cgtcaacttgacacgaaagtcgttgccaaacgtggccttgcaactttcctctatcaagaa
gcgagtccagcaactaatgatacacaagaagaagtcctaaactatcttgaaaaactaggt
cttgtcgtcaatgatcaacgtgctttcgcaactaatataacagaaatttgggcttttatc
gaaaaagtagctgcaatgcgtgatacattggcttacgatattgatggtgttgtgatcaaa
gtcaatcaattagctcagcaaaataccttaggttttactgttaaatttcctaaatgggcc
attgcctacaagtttccagccgaattagctgaaacagaaattttaagtgtggattggact
gtaggcagaacaggagttgtaacgccgactgccaatatgacaccagttttattggcccag
acaactgttgcacgtgcaaccttacataatgttgactacattaaggaaaaagatattcgc
ttaggtgataaagttgtgatttataaggctggtgatatcattccagctgttcagcgtgtt
cttctggataagcggccgtcagattctgttgtgcttgatattccaaaatattgccctgag
tgtgagtcagatttgttgcattttgaagacgaagttgctttgcgctgtgttaatccgctc
tgtccagctcaaattcgtgagaaattgattcactttgctagccgtggtgctatgaatatc
acaggtcttggaattgcagttgtgacgcaactttttgataaaaaattgatttcagatgtc
gctgatttgtatcaactcacgatagatgaccttttgaaactagataaagtaaaagaaaaa
tcagctgaaaaactgtatcaagcgattcaagcttctaaagaaaactcagttgaaaaattg
atttttggcttgggtatccgtcatgttggctcaaaggcagcaaaaattattgctgaaaac
ttatcaaatttgactaatatttccactgcatcaactgagacgctatcagccattccaacg
attggcacagtactggccgaaagtttgacaaaatattttgcattggaaggcacgaaaaaa
ctcttggccgaactacaagctgtgggtgttaattttgattatctaggtcccgttaagcga
gatgatgcccccttatcaggtaagaccgttgtcttaacgggaaaattggcacagttaaca
cgaactgaggctaaggaaaaattggagaatttgggcgcaaatgtcagtggtagtgtttct
aaaaaaacagatatagtcgttgctggtagcgatgcaggtagcaagttgacaaaagcacaa
gacctcggaatagagatctggacagaagaggagctaatcaagttatga
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