Levilactobacillus suantsaii: H3M12_07030
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Entry
H3M12_07030 CDS
T06901
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsua
Levilactobacillus suantsaii
Pathway
lsua03030
DNA replication
lsua03410
Base excision repair
lsua03420
Nucleotide excision repair
lsua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H3M12_07030 (ligA)
03410 Base excision repair
H3M12_07030 (ligA)
03420 Nucleotide excision repair
H3M12_07030 (ligA)
03430 Mismatch repair
H3M12_07030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsua03032
]
H3M12_07030 (ligA)
03400 DNA repair and recombination proteins [BR:
lsua03400
]
H3M12_07030 (ligA)
Enzymes [BR:
lsua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H3M12_07030 (ligA)
DNA replication proteins [BR:
lsua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H3M12_07030 (ligA)
DNA repair and recombination proteins [BR:
lsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H3M12_07030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H3M12_07030 (ligA)
MMR (mismatch excision repair)
DNA ligase
H3M12_07030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H3M12_07030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QMU07248
LinkDB
All DBs
Position
1519562..1521616
Genome browser
AA seq
684 aa
AA seq
DB search
MTDKPVQEMTEQAAAEEAATLRPQLRKWGQQYYDADNPAVEDDVYDRNYARLVALETAFP
ALVTPDSPTQHVGGSVRGDLPKVNHDIPMLSLGDVFSIDELREFNDRLRKDVATEDTTDE
GFDYNCELKIDGLAISLRYENGKFVQGSTRGNGSIGEDITDNLATLPSIPKKLSRPLTID
VRGECYMPKQAFLDLNARREAEGKAPFANPRNAAAGSLRQLHVQVTAERKLETFMYNIAD
YEPLDTRTQSGLLDELAELGFSTNPTYQVAHNMDDVAAYIDQYQAKRADLAYGIDGIVIK
ANPLPLQRAIGATVKVPRWAIAYKFPPEEVETVVRDIEWTVGRTGIVTPTAVMDAVKLAG
STVARASLHNPDYLQAKDIRLGDAVLLHKAGDIIPEISNFVADKRPKDAQPAPIPTTCPS
CGAPLVHLDEEVALRCINPSCPAQLASGMAHFASRNAMNIDGLGPKIVAQLFDKQLVQDV
ASLYHLTAEQLLTLDKFGEKSTQNLLTAIDNSRHNSLERLLFGLGIRHVGAKAARSIAER
FGDLRSLMAADTATIAAIDTVGQIIADSVVTYFATDQAQHLVARLDAAGVNLTYTSGEIV
TAPDSQFADQRVVLTGKLQNLTRPEATKWLETRGAKVTSSVSKSTNLVIAGEAAGSKLTK
AQELGIPVWDEAQLSAAMADENNG
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaacccgttcaagagatgactgagcaagcggccgctgaggaagcggcgacg
ttacggccccaattgcgcaagtggggccaacaatattatgatgctgacaatccagccgtt
gaagatgacgtgtacgaccgtaactatgcccgtttagtagccttagaaacggcctttccg
gcgttagtgacgccggattccccgacccaacacgtcggcgggagcgtacgcggtgacttg
cccaaggtcaaccacgatattcccatgttatcgttaggcgatgtcttttctatagacgaa
ctgcgggaattcaacgaccgactacgcaaggacgtggccactgaagatacgactgatgag
ggcttcgactataactgcgaattaaagattgacggcctagcgatttcgttacggtacgaa
aatggcaagtttgtccagggttcgacgcggggcaatggaagcatcggggaagacatcacc
gataatttggccaccttgccatcgattcctaaaaagttgagccggccattgaccatcgat
gtgcggggcgaatgctacatgcctaagcaagctttcttggacttgaacgcccggcgtgaa
gccgaaggaaaagccccgttcgctaacccacggaatgcggcggctggtagtttacggcag
ttacatgtgcaggtcacggcggaacgtaagctcgaaactttcatgtacaacatcgctgac
tacgagccactcgacacccgcacccaaagtgggttgttagacgagctcgcagaattgggg
tttagcaccaatccgacctaccaggtcgcccataacatggacgacgtggcggcctatatc
gaccagtaccaagccaaacgcgccgacttggcgtacggcatcgacggtatcgtgatcaag
gccaacccgttaccgttacagcgggccatcggggcgactgtcaaggtgccccggtgggcg
attgcctacaagtttccgcccgaagaggtcgagaccgtggtccgcgatatcgagtggacc
gtgggacggaccggcatcgtcacgccgactgcggtgatggacgccgtgaagttggcggga
agtaccgtggcgcgcgcgtcgttgcataacccggactacttgcaggccaaagatattcgt
ctcggggatgcggtcttactgcacaaagcgggtgacatcatcccggaaatttcgaacttc
gtggcggacaaacggcctaaagatgcccaaccagcgccgattccgacgacgtgtccgtcc
tgcggggcgccgctggtccatttagatgaagaagtggccttgcggtgcatcaatcctagt
tgcccggcccaattagcgtctggaatggcccacttcgcctcccgtaacgcgatgaacatc
gatggcttggggccaaagattgtggcgcaactcttcgataagcaactggtccaagacgtg
gccagtctgtaccatttgaccgctgagcaattgttaactttagataaatttggggagaag
tcgacccaaaacctcttgacagccattgacaatagtcgccataattcattagaacgcttg
ctctttggcctaggcatccgccacgtgggcgctaaggccgctcgctcgatagcggaacgt
ttcggtgatttgcgaagcttaatggcggcggacaccgcgactatcgctgccatcgacacc
gtggggcagatcatcgccgatagtgtggtgacttactttgcgaccgaccaggcgcaacac
ttggtggctcggctcgatgccgcgggggtcaatttgacctataccagtggtgaaatcgtc
acggcaccggacagccagtttgcggaccaacgggtggtcttgaccgggaagctacagaat
ctgacccgccccgaagccacgaaatggttggagacccgcggcgccaaagtgactagttcc
gtgtccaagagcaccaacctggtgattgcgggtgaagcggccgggagtaagctgaccaag
gcccaggagttggggattcccgtatgggatgaagcccagctgagtgcggccatggcggac
gaaaataacggataa
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