Limnobacter thiooxidans: RGQ30_30100
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Entry
RGQ30_30100 CDS
T09704
Name
(GenBank) efflux transporter outer membrane subunit
KO
K18139
outer membrane protein, multidrug efflux system
Organism
lto
Limnobacter thiooxidans
Pathway
lto01501
beta-Lactam resistance
lto02024
Quorum sensing
Module
lto_M00642
Multidrug resistance, efflux pump MexJK-OprM
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RGQ30_30100
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RGQ30_30100
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lto02000
]
RGQ30_30100
01504 Antimicrobial resistance genes [BR:
lto01504
]
RGQ30_30100
Transporters [BR:
lto02000
]
Other transporters
Pores ion channels [TC:
1
]
RGQ30_30100
Antimicrobial resistance genes [BR:
lto01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RGQ30_30100
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
RGQ30_30100
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
RGQ30_30100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
BET27509
UniProt:
A0AA86M9A2
LinkDB
All DBs
Position
complement(3330547..3331998)
Genome browser
AA seq
483 aa
AA seq
DB search
MYKAFPKKALALGLALALTGCASGIPLQEKFTGKPEQSTEVALPENVKGVGMNNIQNEAW
WLLLGDPGLNAVVEQALKNNTDVRLANERLNEAGAVLGIAKSQQWPSIFGQFTTGRNRPS
QAGNVPVFGGQNVYQSNQFGFGATWELDLWGRVGALKDAASASFMQQGYNVRGARLSVAA
TAASLYTQVRVLGLQVKVLEQTLESRDSAYKLAKQRYDVGLSNELQLRQTEAELLTVRAQ
LPDTREQLARAQNALAVVVGGNAPVLPALAVDNLQLTKLFILPEDTPSELLLRRPDLAAA
EQQLLAGEANLEAARKAFFPSIGLSAFGGRESADLSNLFSGPARVWSFQTQITQPIFQAG
RLFDERDAAVARRNQAVLQYEASVRAAFQEIYDAIVAQREARERLQARQEQVQTLTQVVR
LAQLRLDNGVANQLELLDAQRNLLNAQLSWASAWQSQQGATLAMIRALGGGFSAEKTPLS
AGS
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtataaagcctttccaaaaaaagcccttgcgctgggtttggcgctggccttgacaggc
tgcgcctctggaattcccttgcaggaaaagttcaccggcaagcctgagcaatccaccgaa
gtggctttgcccgaaaacgtcaagggtgttggcatgaacaacatccagaatgaagcctgg
tggcttttgcttggtgaccccggtttgaatgcggtggttgaacaagccttgaaaaacaac
acggacgtgcggctggccaatgaacgcctgaacgaagcaggtgccgtgttgggtattgcc
aagtcacaacaatggccctccatttttggccagttcacaaccggtcgtaaccggccttcc
caagccggtaatgtgcctgtattcggtgggcaaaatgtgtatcaaagcaatcagtttggt
tttggagccacttgggaacttgacttgtggggtcgtgtgggggcgctgaaagacgcagcc
agtgccagcttcatgcagcagggttacaacgtgcgaggcgcacgcttgagtgtcgcagcc
acagcggcttcgctctacacccaagtgcgtgttttgggccttcaggtcaaggtactggag
caaactcttgaaagccgtgattctgcctacaaactggccaagcaacgttacgacgtgggc
ttgagcaatgaacttcaactgcgccaaactgaagccgaactgctgactgtgcgtgcgcaa
ttgcccgatacgcgtgaacaactagcccgcgcgcaaaacgcattggccgtggtggtgggt
ggcaacgcgcctgtgttgcctgccttggctgtggataacctgcaattaaccaagctgttt
atcttgccggaagacacaccttcagaactgttactgcgcaggcctgacctggccgctgct
gaacagcagttgctggctggtgaagccaacctggaagcagcacgcaaagcatttttcccc
tcaattggcttgagtgcctttggtgggcgtgaaagtgccgacttgagcaatctgttcagt
ggcccagcccgcgtgtggagcttccagacgcagattacccaaccgattttccaggccggt
cgcttgtttgatgaacgcgatgcggctgtagctcgccgcaaccaggccgtgttgcaatac
gaggccagtgttcgcgctgcattccaggaaatttacgacgccattgtggcccagcgtgag
gcgcgagagcgtttgcaggctcgtcaggaacaggttcaaaccttgacccaagtggtgcgt
cttgcacagcttcggctggacaacggtgtggccaaccagctcgagttgctggatgcccag
cgcaacctgttgaacgcgcagctaagctgggcttcagcctggcaaagccagcaaggtgca
acgttggcgatgatccgcgccttggggggcgggtttagtgcagagaagaccccgctgtca
gcggggtcttga
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